Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04640 and BPUM_2818
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence dna-align/BSNT_04640___yuxK.1.24716.seq
# -bsequence dna-align/BPUM_2818.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04640___yuxK-BPUM_2818.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04640___yuxK-BPUM_2818.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04640___yuxK
# 2: BPUM_2818
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 466
# Identity: 267/466 (57.3%)
# Similarity: 267/466 (57.3%)
# Gaps: 107/466 (23.0%)
# Score: 657.0
#
#
#=======================================
BSNT_04640___ 1 GTGACTTCAGAACAAATTCCAAATCGCGTTT--TGCTGTTTGACGGTGTC 48
.||..||||..||| ||| |.|.|.||| |..|.|||||.||||||
BPUM_2818 1 ATGCATTCAACACA---TCC--ACCCCATTTAATTTTATTTGATGGTGTC 45
BSNT_04640___ 49 TGCAATCTATGCAATGGCGCCGTGCAATTTATCATTAAACGTGATCC--- 95
|||||..|.||||..|||||.||.||.|||.|.||||||||||||||
BPUM_2818 46 TGCAACGTGTGCAGCGGCGCTGTTCAGTTTGTGATTAAACGTGATCCAAA 95
BSNT_04640___ 96 -GGACGGAT--TGATTTCTTTCACATCGCTGCAGTCGGAAACAGGGCAGA 142
|..||.|| ||.||.||| ||| |.||.||.||.|||||.|||.
BPUM_2818 96 TGAGCGAATGATGTTTGCTT---CAT---TACAATCAGAGACAGGACAGC 139
BSNT_04640___ 143 GCCTGCTGAAAAAAAGCG----GGCTCCCGACTGA--TCGGTTTGACAGC 186
||.|..|.|||.|||.|| |.|||..|| ||| ||..|| ||
BPUM_2818 140 GCATTTTAAAAGAAAACGGTTTGCCTCTAGA-TGAATTCAATT---CA-- 183
BSNT_04640___ 187 TTTGTCTTTATTGAAGACGGCCAAGTGCAC-------ACAAAGTCAACTG 229
|||.|.|.||||||| ||..|||| ||.|||||.|
BPUM_2818 184 TTTATTTATATTGAA-------AATGGCACCCTTTATACGAAGTCGA--- 223
BSNT_04640___ 230 CAGCCATTAAGGTTTTCAGGCATCTGCGAGGCCCATGGCGGC-------- 271
|||||||||...|.| |||| |||||
BPUM_2818 224 ----------------CAGGCATCTTAAAAG-CCAT-GCGGCAGTTAAAA 255
BSNT_04640___ 272 ----TCTTC-------GTCCTGTTT-TTC---GCAGTACCGAAGCCTGTC 306
|||.| || |.||| ||| ||..|.|||...|||.||
BPUM_2818 256 GGGATCTACAGATGGAGT--TATTTATTCCTTGCCATTCCGCGCCCTATC 303
BSNT_04640___ 307 AGAGATATGGTCTATTCTTT-------CATTGCCAAAAACCGCTATAAGT 349
.|.||| |||| ||| .||.||.|||||.|||||.||.|
BPUM_2818 304 CGCGAT-TGGT------TTTATGAGCGGATAGCGAAAAATCGCTACAAAT 346
BSNT_04640___ 350 GGTTTGG-CAAAAAAAATGAATGTATGCTCCCCTCCCCTTCTATTAAAAA 398
||||.|| |||||||.|| ..||||||.|.||..|.||...|||..||||
BPUM_2818 347 GGTTCGGTCAAAAAACAT-CTTGTATGATGCCAACACCCGATATACAAAA 395
BSNT_04640___ 399 AAGATTTTTACCGTAA 414
|.|.||..||.|.|||
BPUM_2818 396 ACGGTTCCTATCATAA 411
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