Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04651 and BPUM_2829
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:25
# Commandline: needle
# -asequence dna-align/BSNT_04651___mrpA.1.24716.seq
# -bsequence dna-align/BPUM_2829___mrpA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04651___mrpA-BPUM_2829___mrpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04651___mrpA-BPUM_2829___mrpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04651___mrpA
# 2: BPUM_2829___mrpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2554
# Identity: 1709/2554 (66.9%)
# Similarity: 1709/2554 (66.9%)
# Gaps: 296/2554 (11.6%)
# Score: 5346.0
#
#
#=======================================
BSNT_04651___ 1 TTGCAGCTCTTACATCTT-GCTATTTTATCGCCTTTTTTATTTGCTTTTA 49
||||||||..|.|| ||| ||.||..|||||||||||||..||||.|||.
BPUM_2829___m 1 TTGCAGCTTATTCA-CTTCGCCATCCTATCGCCTTTTTTGCTTGCGTTTG 49
BSNT_04651___ 50 T----CATTCCCTTCTTGGCAAAATACGCAAAAAGAGTGCATACGGGCTG 95
| |.||..|||.|| |||||||.|||..|..|.|||||.||.||
BPUM_2829___m 50 TTGTGCCTTTTCTTTTT----AAATACGTAAAGCGTATACATACAGGGTG 95
BSNT_04651___ 96 GTTTGTGTTGATCCTGCCCGTCTTGCTGTTTATATACTTTCTCCCAATGA 145
||||||..|.|||.||||..|.||..|.||||..||.|||.|||.|||||
BPUM_2829___m 96 GTTTGTTCTTATCTTGCCTATTTTATTATTTAGCTATTTTGTCCAAATGA 145
BSNT_04651___ 146 TCAGGATGACACAGTC---TGGAGAAACACTTCGATCGGTAT-------- 184
|.|.||||||| || |||| |||.||.|||
BPUM_2829___m 146 TGACGATGACA---TCAAATGGA---------CGAACGTTATTTTCACAG 183
BSNT_04651___ 185 -TAGAGTGGATTCCGTCACTCGGCATTAACTTTACCGTTTATATAGACGG 233
|||||||||||||.||.||.||.||.||.||.||.||.|||.|||||||
BPUM_2829___m 184 GTAGAGTGGATTCCTTCTCTAGGGATGAATTTCACTGTGTATGTAGACGG 233
BSNT_04651___ 234 CCTCGGGTTATTATTCGCTTTACTGATCACAGGCATTG--GCTCTTTGGT 281
.||..|.||.|||||.||..||.||||.|||||.|||| ||.||| ||
BPUM_2829___m 234 TCTTAGTTTGTTATTTGCGCTATTGATTACAGGTATTGGTGCACTT--GT 281
BSNT_04651___ 282 CACTCTT-TACAGCATTTTTTATTTATCGAAAGAAAAAGAACAGCTTGGG 330
| .|||| |||||.|||||.||.|||||.||.|||||||||||.||.||.
BPUM_2829___m 282 C-GTCTTGTACAGTATTTTCTACTTATCAAAGGAAAAAGAACAACTCGGC 330
BSNT_04651___ 331 CCCTTTTATGTCTACTTATTGATGTTCATGGGCGCCATGCTCGGTGTCGT 380
.|.||||||...||.||.||.|||||.|||..|||.||||||||||||||
BPUM_2829___m 331 TCTTTTTATACGTATTTGTTAATGTTTATGACCGCTATGCTCGGTGTCGT 380
BSNT_04651___ 381 TCTAGTAGACAATGTCATGGTTCTCTACATGTTCTGGGAGCTTACAAGCC 430
||||...||||||.|..|||||||.|||.||||.||||||||.|||||..
BPUM_2829___m 381 TCTATCTGACAATATGGTGGTTCTTTACTTGTTTTGGGAGCTGACAAGTA 430
BSNT_04651___ 431 TTTCATCCTTTTTGCTGATCGGCTATTGGTATAAGCGGGAAAAGTCG--- 477
|.||.||.|||.|.||.||.||.|||||||||||.||||| |||
BPUM_2829___m 431 TCTCTTCTTTTCTACTTATTGGATATTGGTATAAACGGGA----TCGCTC 476
BSNT_04651___ 478 -CGCTATGGCGCAGCCAAATCACTTTTGATTACGGTCAGCGGCGGGCTGT 526
||.|||||.||..|.||||||||..|||||||.||....|||||..||
BPUM_2829___m 477 ACGTTATGGAGCGACAAAATCACTGCTGATTACCGTTTTTGGCGGATTG- 525
BSNT_04651___ 527 GC-ATGCTCGGCGGATTTATTCTCCTTTATTTGATAACGGATTCCTTCAG 575
|| ||||||||.||.|||||.|||||.|||.||||.||.|||||.||.||
BPUM_2829___m 526 GCTATGCTCGGTGGTTTTATCCTCCTCTATCTGATTACTGATTCATTTAG 575
BSNT_04651___ 576 TATTCGAGAGATGGTTCATCAGGTTCA----ATTAATTGCCGGC--CACG 619
||||||.||....|||.|||||.|||| |||| .||| |||
BPUM_2829___m 576 TATTCGTGAAGCAGTTAATCAGCTTCAGCTCATTA-----TGGCATCAC- 619
BSNT_04651___ 620 AATT-GTTTATCCCGGCTATGATTCTCATTTTATTAGGGGCTTTTACGAA 668
.|| .||||||||.||.|||||.||.||.|||.||||.||.|||||.||
BPUM_2829___m 620 -CTTACTTTATCCCTGCCATGATCCTGATCTTACTAGGTGCCTTTACAAA 668
BSNT_04651___ 669 ATCAGCGCAATTTCCTTTTTACATCTGGCTCCCTGACGCGATGGAAGCTC 718
|||||||||.||.||.|||||.||||||||.|||||.||.||||||||.|
BPUM_2829___m 669 ATCAGCGCAGTTCCCATTTTATATCTGGCTGCCTGATGCAATGGAAGCAC 718
BSNT_04651___ 719 CGACGCCTGTCAGCGCTTATCTCCATTCAGCTACTATGGTAAAAGCCGGC 768
|.||.|||||.|||..||||.|.|||||.||.||.||||||||||||||.
BPUM_2829___m 719 CTACCCCTGTGAGCAGTTATTTACATTCTGCCACAATGGTAAAAGCCGGT 768
BSNT_04651___ 769 ATTTATGTGATTGCGAGATTCAGTCCTATTTTCGCCTTTTCAGCTCAG-- 816
||.||..|..|.||..|.||.|||||.||.||.||..|.|||| ||
BPUM_2829___m 769 ATCTACCTTGTAGCCCGCTTTAGTCCCATCTTTGCTATATCAG---AGGT 815
BSNT_04651___ 817 -TGGTTTTGGATCGTGTCCCTCGTTGGCCTCTTTACGATGGTTTGGGGTT 865
||||||||||.|.|.|||.|||||||.||..|.|||.|..|||||||.|
BPUM_2829___m 816 TTGGTTTTGGACCATATCCATCGTTGGACTTGTGACGTTATTTTGGGGAT 865
BSNT_04651___ 866 CATTCCATGC----CGTGAAACAAACTGATTTAAAATCGATTTTGGCGTT 911
|||||||.|| ||| ||||..|||||||||.|.||..|.||.||
BPUM_2829___m 866 CATTCCACGCTGTTCGT----CAAAACGATTTAAAAGCCATCCTTGCCTT 911
BSNT_04651___ 912 TTCAACCGTCAGCCAGCTCGGCATGATCAT-CTCCATGCTCGGAGTCAGT 960
|||.|||||.||.||||||||.|||||.|| || .|||||.||.||..|.
BPUM_2829___m 912 TTCTACCGTTAGTCAGCTCGGGATGATTATGCT-TATGCTTGGTGTTGGA 960
BSNT_04651___ 961 GCTGCGGCCCTTCATTATGGCCATACAGAATATTATAC------AGTT-- 1002
||.||.||..|.||| |||.||.| || |.||
BPUM_2829___m 961 GCAGCTGCAATCCAT------------GAAAATGA-ACCCGCCTATTTCG 997
BSNT_04651___ 1003 -----GCCGCTATGGCTGCCATTTTCCATTTGATCAACCACGCAACCTTT 1047
||||.|.|.|||||.|||||||||||.||.||.||.||.||.|||
BPUM_2829___m 998 GCGCGGCCGTTCTCGCTGCGATTTTCCATTTAATTAATCATGCCACGTTT 1047
BSNT_04651___ 1048 AAAGGAAGCTTGTTTATGGCAGTCGGGATTATCGATCACGAAACAGGCAC 1097
|||||.||..|.||||||||.|..||.||.||.|||||||||||.|||||
BPUM_2829___m 1048 AAAGGCAGTCTCTTTATGGCGGCTGGTATCATTGATCACGAAACCGGCAC 1097
BSNT_04651___ 1098 ACGGGATATCCGGAAGCTAGGCGGCCTGATGGCGATTATGCCGATTACAT 1147
.|||||.||.||||||.|||||||..|.|||.|.||||||||||||||.|
BPUM_2829___m 1098 TCGGGACATTCGGAAGTTAGGCGGTTTAATGACCATTATGCCGATTACCT 1147
BSNT_04651___ 1148 TTACCATTTCCTTAATCGGGACATTTTCAATGGCCGGCCTACCGCCGTTT 1197
||||.|||.|.||||||||.||||||||||||||.||.||.|||||.|||
BPUM_2829___m 1148 TTACGATTACGTTAATCGGTACATTTTCAATGGCTGGTCTCCCGCCATTT 1197
BSNT_04651___ 1198 AACGGATTTTTGAGTAAAGAAATGTTTTTCACAAGCATGCTTCGCGTGAC 1247
||.||.||.||.||||||||..|||||||||||||.|||.| ||
BPUM_2829___m 1198 AATGGTTTCTTAAGTAAAGAGCTGTTTTTCACAAGTATGAT-------AC 1240
BSNT_04651___ 1248 ACATTT------TGACCTGTTCA-ACGTGCAGACATGGGGCGTTCTGTTC 1290
.||||| |.|.||.|.|| ||.|...|||||||||||.|.|
BPUM_2829___m 1241 GCATTTCTGAAATCAGCTTTACAGACATTTCGACATGGGGCGCTAT---- 1286
BSNT_04651___ 1291 CCTCTTTTC--------GCCTGGATCGGAAGTGTATTTACGTTTATCTAC 1332
||||| ||.|||.|||..|||||.||||||||.||.|||
BPUM_2829___m 1287 ----TTTTCCAGCAATTGCTTGGCTCGCTAGTGTCTTTACGTTCATTTAC 1332
BSNT_04651___ 1333 AGCATGAAATTGCTGTTTAAAACATTCAGAGGAAATTACCAGCCTGAACA 1382
||.||||...|.||.|||||||||||.|||||..||...|||...||.||
BPUM_2829___m 1333 AGTATGATGCTTCTCTTTAAAACATTTAGAGGCCATCTTCAGTTAGATCA 1382
BSNT_04651___ 1383 GCTT---GAAAAA-CCGGCTCACGAGGCGCCTGTCGGCATGCTCGTACCA 1428
.|| |||||| ||| ||.||.||.||..|.||.||||||.|.||.
BPUM_2829___m 1383 -ATTAGAGAAAAAGCCG---CATGAAGCACCGATTGGTATGCTCATCCCG 1428
BSNT_04651___ 1429 CCGGTCATTCTTGTCGCTTTGGCTGTCAGTCTCTTCTTTTTCCCGAATAT 1478
||..|.||.||||..||..|.|..||||...|.|||||.|||||.|||||
BPUM_2829___m 1429 CCAATTATCCTTGCTGCACTTGTGGTCACCTTTTTCTTCTTCCCAAATAT 1478
BSNT_04651___ 1479 ATTGTCGTACAGC-----CTG--ATAGAGCCTGCGA-TGAACTCAATCTA 1520
|..||| ||| ||.||.|||||.| ||.|..||.|.|
BPUM_2829___m 1479 -------TCTAGCTTATTCTGTCATTGAACCTGCAATTGCAGCCATTAT- 1520
BSNT_04651___ 1521 TCC-GACACTGC--TTG--CCGGCCATGAGAAATTCCACG-------TTC 1558
||| || ||| ||| ||.| |||| ||| .||
BPUM_2829___m 1521 TCCAGA---TGCGATTGATCCAG------GAAA----ACGGTTTGTTGTC 1557
BSNT_04651___ 1559 ACATTTCACAG--TGGCATGGGGTTACA-ACGGAATTGCTC---ATGACT 1602
|.|.||.| || ||||| .||.||.|| .|.|| |||| |||||.
BPUM_2829___m 1558 AAAATTGA-AGCATGGCA-CGGTTTTCAGCCAGA---GCTCTATATGACA 1602
BSNT_04651___ 1603 GCGGGTATTGTTGTGATCGGAACAATTGGTTATTTGTCGCTGAATAAGTG 1652
..||||.||||.|...|.||||..||.||.||||||.||.||...||.||
BPUM_2829___m 1603 ATGGGTGTTGTCGCTTTAGGAATTATCGGATATTTGACGTTGTCAAAATG 1652
BSNT_04651___ 1653 G--------AAAGGAATCTAT-------AAACTG----TTTCCTTCGAAA 1683
| |.| .|||.||| |||.|| ||| ||
BPUM_2829___m 1653 GCGTCCGATATA-TAATATATTCAAGAAAAAATGGTCATTT-------AA 1694
BSNT_04651___ 1684 CTCACACTCAACCGGTTATACGATAAGCTTTTGACTCTGA----TGGAGA 1729
||| .|||||.||| .|| |.||||..| |.||.|
BPUM_2829___m 1695 CTC-----------CTTATATGAT-CGC---TCACTCATAGGCTTAGAAA 1729
BSNT_04651___ 1730 AAGGCTCTTACCGGATCACAAAACAA-----TATATGACCGGGTTTTTAA 1774
|||||||.||.||..| ||||| |||||||||||.||..|..
BPUM_2829___m 1730 AAGGCTCCTATCGTCT-----AACAAGCAGCTATATGACCGGTTTCCTTC 1774
BSNT_04651___ 1775 GAGATTA-TTTGCTGTATATCTTCGCTGGTTTCATCATT---CTGATAGG 1820
|.||||| .||| |.|||.|.|| |||.|||||.||| .||.|.||
BPUM_2829___m 1775 GTGATTACCTTG-TCTATGTGTT---TGGGTTCATGATTATCGTGCTTGG 1820
BSNT_04651___ 1821 CGG----AGCTTTTGCCATTA-AAGGCGGATTTTCATTTAAAACG--GAA 1863
.|| |..|||| ||.| ||.|| .|||||||||||.|.| |||
BPUM_2829___m 1821 GGGCGTAATGTTTT---ATCAGAATGC--CTTTTCATTTAATATGAAGAA 1865
BSNT_04651___ 1864 GGCATGGCTAAAATCGG--TGTATACGAAATCATTTTGACGCTTGTCATG 1911
.|| .|||..|||||| .|||| ||..|||||.|..|..|.||.|||
BPUM_2829___m 1866 TGC--TGCTCCAATCGGCACGTAT--GAGGTCATTCTCTCATTAGTGATG 1911
BSNT_04651___ 1912 ATCAGC-GCCACAGTGGCGACTGTTTTTGCTAGGTCAAGACTGACGGCGA 1960
|| ||| ||.||..|..|||||||.||||||.|.||..|..|.||.||.|
BPUM_2829___m 1912 AT-AGCAGCAACCCTCACGACTGTGTTTGCTCGTTCTCGCTTAACAGCCA 1960
BSNT_04651___ 1961 TCATTGCACTCGGTGTTGTCGGTTATACGCTTGCATTGTTTTTTGTCATT 2010
|.||.|.|.|.|||||..|.||.||.||.||..||.|.||||||||.|||
BPUM_2829___m 1961 TTATCGGATTAGGTGTCATGGGGTACACACTGTCACTATTTTTTGTTATT 2010
BSNT_04651___ 2011 TTCAGAGCGCCGGATTTGGCATTGACCCAGCTCGTCATTGAAACGATTTC 2060
|||||.||.||.|||.|.||..|.||||||.|..|.||||||||.|||||
BPUM_2829___m 2011 TTCAGGGCACCTGATCTTGCCCTCACCCAGTTAATTATTGAAACAATTTC 2060
BSNT_04651___ 2061 TGTGGCACTGTTTCTGCTTTGCTTCTACCATTTGCCGAAACTGAGGCTGA 2110
|||.|||||||||.|.||||||||||||||.|||||..|||||||..|||
BPUM_2829___m 2061 TGTTGCACTGTTTTTACTTTGCTTCTACCACTTGCCACAACTGAGCATGA 2110
BSNT_04651___ 2111 AAACAAAAACGAGAACGTTCCGGATGACGAATTTTATCATTTCTTTAGGC 2160
|...|||||||||.|..||....|||||.|||.|.||||||||..||||.
BPUM_2829___m 2111 AGCAAAAAACGAGGAAATTTAAAATGACCAATCTCATCATTTCAGTAGGT 2160
BSNT_04651___ 2161 GTCGGTATTATTGTTACTCTG-CTTGGTATCGCATCCTCAAGCCAACGGA 2209
||.||..|.|||||.|| .|| ||||.|.||||.|||.|||||.|.|.|.
BPUM_2829___m 2161 GTTGGCGTCATTGTGAC-ATGCCTTGCTTTCGCTTCCACAAGCAATCAGT 2209
BSNT_04651___ 2210 CAAAAGACAGCATTGCGTCCTTCTTTGTCAAACACAGCCACGATCTCGGC 2259
||...||.|..||||||||.|.||||.|..||.|||||.||.|.||.|..
BPUM_2829___m 2210 CACTTGATACGATTGCGTCTTACTTTATTGAAAACAGCTACAAGCTTGCA 2259
BSNT_04651___ 2260 GGAGGGGATAATGTCGTCAATGTCATTCTTGTTGATTTCAGGGGATTTGA 2309
||.||..|.|||.|.|||||||||||.|||||||||||||||||.|||||
BPUM_2829___m 2260 GGCGGAAACAATATTGTCAATGTCATCCTTGTTGATTTCAGGGGCTTTGA 2309
BSNT_04651___ 2310 TACAATGTTTGAAATTACGGTATTAACAATAGCCGCTCTCGGCATTTACA 2359
||||||||||||||||||.||..|..|.||.||.||.|||||.||||| .
BPUM_2829___m 2310 TACAATGTTTGAAATTACCGTGCTGGCGATTGCGGCACTCGGTATTTA-T 2358
BSNT_04651___ 2360 GCATGATTAAA-ACAAAAGTAAAA--GAGGAGGGGAAAAGCGGTG----A 2402
|.||.|||||| |||.|||.|||| ||.|||.||| ||| .
BPUM_2829___m 2359 GGATTATTAAAGACACAAGGAAAACGGAAGAGAGGA------GTGCGCCG 2402
BSNT_04651___ 2403 ATGA 2406
||||
BPUM_2829___m 2403 ATGA 2406
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