Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04664 and BPUM_2838
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:26
# Commandline: needle
# -asequence dna-align/BSNT_04664___comP.1.24716.seq
# -bsequence dna-align/BPUM_2838___comP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04664___comP-BPUM_2838___comP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04664___comP-BPUM_2838___comP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04664___comP
# 2: BPUM_2838___comP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2522
# Identity: 1599/2522 (63.4%)
# Similarity: 1599/2522 (63.4%)
# Gaps: 424/2522 (16.8%)
# Score: 4647.0
#
#
#=======================================
BSNT_04664___ 1 ATG-TACAGATATATTAACGTCTA--TAAATATTTGTCTCTAGTTTTTAT 47
||| .|.||.||||| |||| |.||.|.||.|.| ||| |.||
BPUM_2838___c 1 ATGAGAAAGTTATAT-----TCTAAGTTAACAGTTATAT-TAG---TAAT 41
BSNT_04664___ 48 CATTTTAAGTTTTATTTATGTTATATACCTCTCGTATAGCTTTGCTTTTA 97
|.|| ||.||.||.|||||.||.|||.||||.||||.|...|..||||
BPUM_2838___c 42 CCTT---AGCTTCATCTATGTGATTTACATCTCTTATATCAACGTATTTA 88
BSNT_04664___ 98 ACATCTTCGTAGGTGCGGATG-TAAAGATAAATGAACAGGGT-AAGTTAG 145
|.||.||.||.||.||.|.|| |||||| ||||...||.||| ||.|| |
BPUM_2838___c 89 ATATTTTTGTTGGAGCAGCTGTTAAAGA-AAATAGTCATGGTCAACTT-G 136
BSNT_04664___ 146 AGGTCACCAATGTTT-----TAGATTATACAGATGAATAT-TATTCATGT 189
|||| |.||..| || |||.|||||||...||| || .|..|.
BPUM_2838___c 137 AGGT----AGTGGATGTCGATA-ATTTTACAGATAGCTATCTA-GCTGGA 180
BSNT_04664___ 190 GTGAAAAAGGGAGATATCATTCTTGAAGTAAATGGGGAGAAAGGCAGTGA 239
||.|..||.||.||||||||.|||||||||||||||
BPUM_2838___c 181 GTTAGGAAAGGCGATATCATACTTGAAGTAAATGGG-------------- 216
BSNT_04664___ 240 TATTCAATTAAAA---AGTGGAAGA----------------TTGGTCAAT 270
|||.|||| |||.||||| ||.|..|||
BPUM_2838___c 217 -----AATAAAAAACCAGTTGAAGAAGTTAAAAGAGGTTTTTTAGCTAAT 261
BSNT_04664___ 271 GTAGAAAGTTTAATTGTTGAGAGA---GATAATAAATCATTTCATTTACA 317
||..||||||||.|.|||||.||| |.|.|||| |.||.|||||.|
BPUM_2838___c 262 GTTAAAAGTTTAGTCGTTGATAGACATGGTGATAA---AATTGATTTAGA 308
BSNT_04664___ 318 AAATGTAAGCCTAATCAGTGAAGAAAATTTATTTATGTATCTCATTCCTG 367
.||||||||..||.|.|||.|||..|||.|.|||||.|||||.||.||.|
BPUM_2838___c 309 GAATGTAAGGTTATTGAGTCAAGCGAATCTGTTTATTTATCTAATACCAG 358
BSNT_04664___ 368 TAATATC-TTATTCAATCTGTTTATTTTGTATATTTTTTATTTATAGAAT 416
|.|| || ||||||.||||||.||||||||||||||.|.||||..|.|||
BPUM_2838___c 359 TCAT-TCTTTATTCCATCTGTCTATTTTGTATATTTATGATTTTAAAAAT 407
BSNT_04664___ 417 AAATAAAGT------AAGAAAATCAACTTCTGCTTATATTTTAATTTTAT 460
.|||||||| ||.||||||| ||||||||||||..|||||
BPUM_2838___c 408 GAATAAAGTAAACCAAAAAAAATCA------GCTTATATTTTAGCTTTAT 451
BSNT_04664___ 461 TTTTGTTATTT----GTATCAGTAGCGTATGTAAGTGCATGTGGAGCAAG 506
||.| ||| ||.||..|||..|||||||||.|..||||..|..|
BPUM_2838___c 452 TTCT----TTTGGCGGTGTCTATAGGTTATGTAAGTTCTGGTGGTTCTGG 497
BSNT_04664___ 507 AAGAGGTGAAGAGATAAGCACTTATC-------TGCTTGT--TC-TTACT 546
||.||| |||| || |||| |.||||| || ||||
BPUM_2838___c 498 AAAAGG---AGAG----GC---TATCAGTCGTATTCTTGTAATCGTTAC- 536
BSNT_04664___ 547 TTAGTCAGTTGTCCGGTGT--------TATATATTCATTTTATATATAAA 588
|.|.|.| .|||| |||||||.||.|||||.|||.||
BPUM_2838___c 537 --AATGAAT-----AGTGTACCTCCACTATATATGCACTTTATGTATCAA 579
BSNT_04664___ 589 TACTTTATAGAATTAGGAACA-AAGTTATTCGAAAAGAAGA----TTTTA 633
||.||.|.||||||||||||| ||.||||||| ..|..|| ||||
BPUM_2838___c 580 TATTTAAAAGAATTAGGAACAGAAATTATTCG--TCGTCGAGTTCTTTT- 626
BSNT_04664___ 634 ATCATTATGTATAT-GCTCCCGCTAATAAATC-TTTTATTAG-------- 673
|.||| |||||.| |.|||.|.||.||| | |||||||||
BPUM_2838___c 627 -TTATT-TGTATCTAGTTCCAGTTACTAA--CGTTTTATTAGTTTTATTC 672
BSNT_04664___ 674 --------------AGGACGTTCTGAGTA-ATAGATTAAAATCTTCGGCT 708
||||| .|||| ||..||||..||
BPUM_2838___c 673 TATAAAAATAAAGCAGGAC-----CAGTAGATCTATTAGCAT-------- 709
BSNT_04664___ 709 TTTTTGTCTAATCTGAATTTGATTTCATTTTTTGTCCTAGTTCTTACTGT 758
||.|.|||||..|||||||||||||.||.| |||.| .|
BPUM_2838___c 710 ----------ATGTCAATTTACTTTCATTTTTTGTTCTGG--CTTTC-CT 746
BSNT_04664___ 759 ATCGATTCTTAT--CCATAAAGG--GATAAGAAAATTTAAACAAAAAGAG 804
.||||||.|||| |.||||.|| |.||| ||||||.|||.|.||.|
BPUM_2838___c 747 TTCGATTATTATCACTATAAGGGCTGCTAA-AAAATTGAAAGACAATG-- 793
BSNT_04664___ 805 CAAAAGTCAATTTTG-AAAGTCCTT---GCTTATACA---AAT---ATCT 844
|||||| | ||.||.||| ||.|.|.|| |.| ||||
BPUM_2838___c 794 ---AAGTCA-----GCAATGTACTTCGAGCATTTGCACTCATTTTAATCT 835
BSNT_04664___ 845 TTTCTTTCAGTCCGTTTATTGTCTTTTTTGCTGTTCCATATGTGTTTTTC 894
..||.||||||||.||.||..|.||||||....||||.||| |||||.
BPUM_2838___c 836 CATCATTCAGTCCATTCATGCTATTTTTTATCATTCCTTAT---TTTTTT 882
BSNT_04664___ 895 GAGAAGTA-------TGTCTCACCTTTTAGTT-TGGCTGCTTTTACACTT 936
| ||| |.|.|||||||.| ||| |.||..|.|||...|||
BPUM_2838___c 883 G----GTATATATTTTATTTCACCTTAT-GTTGTTGCATCGTTTGTTCTT 927
BSNT_04664___ 937 GTTATACCTTTTTCTTTAGTATATCAATTTATGACTAATAGACTTTATAA 986
.|.||.|||||||...||||.||||||||||||.|.||||..||.|||||
BPUM_2838___c 928 TTAATTCCTTTTTTCCTAGTCTATCAATTTATGTCAAATAAGCTGTATAA 977
BSNT_04664___ 987 TATCGACTTTGTTGTGGGGCGGCTTAAGTACTACGGTTTTTTAGCCATTA 1036
|.|.||.||..||.|||||.||.||||.|||||||||||||||||.||||
BPUM_2838___c 978 TGTTGATTTCTTTATGGGGAGGATTAAATACTACGGTTTTTTAGCGATTA 1027
BSNT_04664___ 1037 CACCTACTATTATCGTAG----TGACCATCTTTAATTACATTCAGCAACC 1082
||||.||.||..|.||.| || |.|||.|||...||||..||||
BPUM_2838___c 1028 CACCAACAATACTAGTGGTTGTTG----TTTTTGATTTTCTTCAAAAACC 1073
BSNT_04664___ 1083 -AAAGGATATCTTTTATTTAGTTAAACTAACAATTGCA--ATATATGTTC 1129
||.|.|.|| ||.|||..|||.|||.|.||||| || |..||..|||
BPUM_2838___c 1074 GAATGCAAAT-TTCTATACAGTGAAATTTACAAT--CATCACGTACATTC 1120
BSNT_04664___ 1130 TTATGTTTGCCGTTTTTTACTTTAAAGAAATCATTGATTTTCG-TTTCAA 1178
|||||.|..|||||||.||||||||||||||.||.|||||.|| ||||
BPUM_2838___c 1121 TTATGCTCACCGTTTTCTACTTTAAAGAAATTATCGATTTCCGCTTTC-- 1168
BSNT_04664___ 1179 G-TTGAAAAGATTTACAGAGAAATTTAATTATCAAGATGGGATTTTTAAA 1227
| |||||..|.|||.|||||||...|||||||||.|||.|..|.||||||
BPUM_2838___c 1169 GTTTGAAGCGTTTTTCAGAGAAGCATAATTATCAGGATAGTGTATTTAAA 1218
BSNT_04664___ 1228 TTTACTCAGTTGATTAAGCAAGCATCATCAGTAGATCAAGTACTTAATCA 1277
|||||.|||.|.|||....|.||.||||||.|..||||||||.|..||||
BPUM_2838___c 1219 TTTACACAGCTCATTCGTGAGGCGTCATCACTTCATCAAGTATTGTATCA 1268
BSNT_04664___ 1278 CTTTAAAAATACA--ATCCTAGAAGTA------TTAAACATAG--ATAAT 1317
||.|||||||| |||.|||||||| .|.||||.|| .|..|
BPUM_2838___c 1269 --TTTAAAATACACCATCTTAGAAGTACTTGTTGTGAACAAAGCCTTTGT 1316
BSNT_04664___ 1318 GCTTG-CGTGTA---TGAT-----AATTCT--AAAGGGGA--AATCACCC 1354
||||| .|||.| .||| ||||.| ||| ..|| |||||
BPUM_2838___c 1317 GCTTGAAGTGAAGGCAGATGGACAAATTGTTGAAA-TTGATGAATCA--- 1362
BSNT_04664___ 1355 TTCTTAGTAAGAA---CAACTTT--AAAGATCTGACTTATAAAAATCAT- 1398
.||| ||||| ||.||.| ||||| |||| .|
BPUM_2838___c 1363 ---ATAG-AAGAAAGCCAGCTATGGAAAGA------TTAT-------GTG 1395
BSNT_04664___ 1399 GAGCAATATGTGAAAAATTTTTCTGGTGATATCGGTAAAATTAAAGAGTT 1448
||.|||| |..||.||.|||..|||||..|.||||||||.|..|.|.|
BPUM_2838___c 1396 GATCAAT---TTCAAGATATTTTAGGTGAAGTTGGTAAAATCATCGCGCT 1442
BSNT_04664___ 1449 TAAACAAGGTTTTATTATTAAAATAGGTGAACGAGGAGACAGATCA-TTT 1497
|.|..||||.|||||.||.|||||.|||||.||.|| .|.||| |.|
BPUM_2838___c 1443 TGATAAAGGGTTTATGATGAAAATTGGTGAGCGGGG----CGGTCACTCT 1488
BSNT_04664___ 1498 TTAGTACT---CTGTTTCTCAAGTTATAAT------ACTTTTAAGTTAAC 1538
||.||..| ||||||.|| |||| ||...||||.|.||
BPUM_2838___c 1489 TTTGTGATTTGCTGTTTATC------TAATTTACGGACACCTAAGCTGAC 1532
BSNT_04664___ 1539 AAGGGATGAAATTGCATGGCTTCAAACATTAGCATTTTATACAAATGTCT 1588
..|.||||||||..|||||||..|||||||.||.|||||.||||.||||.
BPUM_2838___c 1533 CCGAGATGAAATCTCATGGCTAAAAACATTGGCGTTTTACACAAGTGTCA 1582
BSNT_04664___ 1589 CATTGGAAAACGTTATGAAAATCGAAGAATTGATGGTGCATCTTGAGGAT 1638
..||.|||||.||..|.||.|||||||||.||||||.|||||||||||||
BPUM_2838___c 1583 GTTTAGAAAATGTCGTCAAGATCGAAGAACTGATGGAGCATCTTGAGGAT 1632
BSNT_04664___ 1639 TTAAAACAACAAGAATCCAACCCCGTATGGCTCAAAAAACTCATGTACAC 1688
||.|||||.|..|||.|.|||||.|..|||.|.||||||.|.||||...|
BPUM_2838___c 1633 TTGAAACAGCGTGAAGCGAACCCTGCTTGGTTGAAAAAAGTGATGTTTGC 1682
BSNT_04664___ 1689 GATCGAGGAAAAACAACGCTCGGATCTCGCCCGCGATCTCCACGATTCGG 1738
|||.||.||||||||.|||||.|||.|.||..|.|||||.||.|||||.|
BPUM_2838___c 1683 GATGGAAGAAAAACAGCGCTCCGATTTAGCGAGAGATCTTCATGATTCCG 1732
BSNT_04664___ 1739 TTCTTCAGGATTTGATTTC-CTTAAAACGCCAGTGTGAGCTGTTTTTGGG 1787
|..|.|||||||||||.|| ||.|||| |.||||..|||.|||||||...
BPUM_2838___c 1733 TGTTGCAGGATTTGATATCGCTGAAAA-GACAGTCAGAGATGTTTTTAAC 1781
BSNT_04664___ 1788 TGATTTTAAGAAGGGTGAT-AATCCGTGCCGTGAAGAGGTGCA------- 1829
..||||..|.|| .||| ||| ||.||
BPUM_2838___c 1782 GAATTTCCAAAA---CGATCAAT---------------GTCCAACCTCTA 1813
BSNT_04664___ 1830 --GGACAA--GCTTGTACAGAT------GAATGAGCAGATGTCTGATGTG 1869
|.|||| |||| || ||||||.||.||||||.|.|||
BPUM_2838___c 1814 TTGAACAATCGCTT------ATCTCTTGGAATGAACAAATGTCTAAGGTG 1857
BSNT_04664___ 1870 ATTTCGATGACGAGGGAGACGTGTCATGAGCTGCGGCCGCAGCTTCTGTA 1919
|||...|.||||||.||.||.||||||||.||.|||||.|||||.|||||
BPUM_2838___c 1858 ATTCAAACGACGAGAGAAACATGTCATGAACTTCGGCCACAGCTGCTGTA 1907
BSNT_04664___ 1920 TGATCTTGGGCTGGTCAAGGCGCTGTCGAAGCTGGTGGCGCA---GCAGC 1966
.|||.|.||..|.||.||||||.|.|||||||||....|.|| .|||.
BPUM_2838___c 1908 CGATTTAGGTTTAGTGAAGGCGATATCGAAGCTGACTTCTCAAATTCAGG 1957
BSNT_04664___ 1967 AGG-AGCGGGTTCCGTTTCATATCCGTTTAAATAC----CG--------- 2002
||| ||| .||.||||||||.||..|.||||| ||
BPUM_2838___c 1958 AGGAAGC----ACCATTTCATATTCGGCTGAATACGACACGCTTTGATAA 2003
BSNT_04664___ 2003 GGAGATTTACGGCTTCCCTTGATCTGGATTCGCAGCTGAATTTGTACCGG 2052
||||.|..| |.|||||.|.||.||.|||||.|||.|.||.|||
BPUM_2838___c 2004 GGAGCTGGA-------CATTGATATTGACTCCCAGCTTAATATTTATCGG 2046
BSNT_04664___ 2053 ATCATTCAAGAGTTTCTGTCTAATGCGGTCAAGCACTCTCAGGCGACGGA 2102
||..||||.|||.|..|.||.|||||..|.||.||.|||||.||.|...|
BPUM_2838___c 2047 ATTGTTCAGGAGCTGTTATCCAATGCCTTGAAACATTCTCAAGCCAGCCA 2096
BSNT_04664___ 2103 TGTGCTGATTATGCTCATCAGTATTCAAAACAAAATCGTTCTTCATTATG 2152
.|||||..|.|||||.||..|||||.||.|..|..|.||||||||.||||
BPUM_2838___c 2097 AGTGCTCGTGATGCTGATTTGTATTAAAGATCAGGTTGTTCTTCACTATG 2146
BSNT_04664___ 2153 AGGATGATGGCGTAGGATTTGATCAGGAAAAGAA---TACTGAGCATTCC 2199
||||||||||.||.||.|||||| |.||.|.| |..|.||||..|.
BPUM_2838___c 2147 AGGATGATGGAGTTGGTTTTGAT---GCAAGGCACCTTGATCAGCACACG 2193
BSNT_04664___ 2200 ATGAGCATGGGGCTTTCTGGCATTAAGGAGA--GAGTCAGGGCTTTAGAT 2247
|||||||||||.||.|||||.||.| |||| ||||||.|||.|||.||
BPUM_2838___c 2194 ATGAGCATGGGTCTCTCTGGAATCA--GAGAACGAGTCAAGGCGTTAAAT 2241
BSNT_04664___ 2248 GGGCGCCTTCGGATTGAAACA-----AGTGAAGGAAAGGGCTTTAAGGCT 2292
|||...||||..|||.|.||| | ||| ||||||| |.|||| |
BPUM_2838___c 2242 GGGAAGCTTCACATTCATACAGCACCA--GAA--AAAGGGC-TGAAGG-T 2285
BSNT_04664___ 2293 G-ATATTGAAATCGAATTGTAA 2313
| |.||||||||.|||||||||
BPUM_2838___c 2286 GAAAATTGAAATGGAATTGTAA 2307
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