Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04669 and BPUM_2842
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_04669___yuzC.1.24716.seq
# -bsequence dna-align/BPUM_2842.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04669___yuzC-BPUM_2842.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04669___yuzC-BPUM_2842.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04669___yuzC
# 2: BPUM_2842
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 433
# Identity: 211/433 (48.7%)
# Similarity: 211/433 (48.7%)
# Gaps: 143/433 (33.0%)
# Score: 404.0
#
#
#=======================================
BSNT_04669___ 1 ----------ATGAGATATCGTTATCCCTGGTTTTACGTGTATCCG-TAT 39
||| .||.|||| ||||.|||...|.|| .||| .||
BPUM_2842 1 GTGTTTTACTATG----TTCCTTAT-CCTGCTTTGCAGGGT-CCCGCAAT 44
BSNT_04669___ 40 GAGGTACGCCG------TCCGCCCGCTCC--------TGCCAACAATATT 75
|| |||| |.|||.|.|.|| |.||..||.||
BPUM_2842 45 GA-----GCCGTGCACATTCGCGCACACCTATGACTTTTCCTCCAGTA-- 87
BSNT_04669___ 76 GATACC--TTTATCCGTTCAGCGAGGC----AGG---CCGCAGGGATATT 116
|||.|| .|.|| |||||||||.| ||| ||||..|..|..|
BPUM_2842 88 GATGCCCACTCAT---TTCAGCGAGCCGCAAAGGAATCCGCCCGACTTGT 134
BSNT_04669___ 117 TGCGGATGC-CCAGCTCGTT-CTCGGCCGCATTGCGGGCTCGCGGGAGCT 164
|||.||||| .|| ||..|| |.|.||.| |||.|..|||| .||
BPUM_2842 135 TGCTGATGCTTCA-CTTATTACACAGCAG-ATTTCCAGCTC------CCT 176
BSNT_04669___ 165 CTCG------CGCCGCATTCTGACCGCAGCCGAGCAGTCCGA-TAAACAA 207
.||| |..||.||..||...||.||.||||..||.|| |..||||
BPUM_2842 177 TTCGTTTGCACAACGGATAATGGAGGCTGCTGAGCGCTCTGATTCGACAA 226
BSNT_04669___ 208 --ACCATCAAGCGCCTGATCAAACAAATGGGTGTCCGGCATGAAGTGG-- 253
..||||| |..||.|.||||||||.||||| |.| ||||||
BPUM_2842 227 GTGTCATCA---GAATGCTGAAACAAATCGGTGT---GAA--AAGTGGGA 268
BSNT_04669___ 254 -----ATACGGTCTTTAATCCCGACGGC------ATCTA----TATC-AG 287
||.|| |||||.|||.||.||| ||||| |.|| .|
BPUM_2842 269 TCGACATCCG--CTTTAGTCCAGAAGGCATTCGGATCTACTTGTCTCTTG 316
BSNT_04669___ 288 CCT-TATCGGAACGCAAAGCCGAATCATTCTTGCTTTGCGGTGGTCAGAG 336
||| | |||.||.|..|||||..|||.|.||||.||.|.
BPUM_2842 317 CCTCT------------AGCAGACTTTTTCTTCTTTTACAGTGGGCATAA 354
BSNT_04669___ 337 GACCGCAATCATTTTGCGTCCATAAGATTATGA 369
BPUM_2842 354 --------------------------------- 354
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