Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04678 and BPUM_2850

See Amino acid alignment / Visit BSNT_04678 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_04678___yueF.1.24716.seq
#    -bsequence dna-align/BPUM_2850.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04678___yueF-BPUM_2850.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04678___yueF-BPUM_2850.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04678___yueF
# 2: BPUM_2850
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1187
# Identity:     766/1187 (64.5%)
# Similarity:   766/1187 (64.5%)
# Gaps:         160/1187 (13.5%)
# Score: 2341.5
# 
#
#=======================================

BSNT_04678___      1 TTGTTGAAATCAAAAGTCCATTTTTGGACATTGCAGATTTTATTTGTTTT     50
                     |||||.|||||.||||||||||||||||||||.||.||.|||.|||||||
BPUM_2850          1 TTGTTAAAATCTAAAGTCCATTTTTGGACATTCCAAATATTACTTGTTTT     50

BSNT_04678___     51 GCTGATTATTTTTGTAGCAACAAAAGTTTCATTTGTATTTCAGCCGTTTA    100
                     .||.|||.|.|.||||.|||||||.|||||.|||.|||||||||||.|||
BPUM_2850         51 ACTCATTGTGTATGTATCAACAAAGGTTTCGTTTTTATTTCAGCCGATTA    100

BSNT_04678___    101 TTGTTTTTATCTCGACATTGTTTTTCCCGATGCTGATTGCGGGAATTTTG    150
                     ||.|.|||...||.||..|||||.||||.||..||.|.|||||.|||.||
BPUM_2850        101 TTTTATTTGCATCAACGCTGTTTGTCCCCATCTTGCTGGCGGGTATTCTG    150

BSNT_04678___    151 TATTTCATATTTAATCCGGTCGTCCGCCTGCTTG---AAAAAAA------    191
                     |.||||||.||||||||..|.||.|| .|..|||   ||.||||      
BPUM_2850        151 TTTTTCATCTTTAATCCAATTGTTCG-ATTTTTGTCCAAGAAAATCCCTA    199

BSNT_04678___    192 -AATTC-CGCGGACATTATCCATTCTATTGATCTATTTA----CTGTTTA    235
                      ||.|| |||      |||||       ||||| |||||    |||||.|
BPUM_2850        200 GAACTCTCGC------TATCC-------TGATC-ATTTATCTCCTGTTCA    235

BSNT_04678___    236 TCGGTTTGCTTGCCTTTATTTCAGCGTCA-----GTCGGACCTATCATCA    280
                     |.||..|..|..|.|||||     |||||     |..||.||..|.||.|
BPUM_2850        236 TTGGACTCATCACGTTTAT-----CGTCAATGCTGCTGGGCCGGTGATTA    280

BSNT_04678___    281 CCTCACAGGTGACAGGGCTGTTTAACAACCTT-CCTGATTATATAAAACA    329
                     ..||.|||||....||.|| |.|.|.||.||| ||||.||||.|||...|
BPUM_2850        281 TTTCGCAGGTCGGTGGACT-TGTCAAAAGCTTCCCTGGTTATGTAACGGA    329

BSNT_04678___    330 GATTCAGGCGCTGACAAAGGATTTGTCCCATTCTCAATGGTTTACCTGGA    379
                     .||.|||....|.|..||.||.||.||.||||||.||...|||||.||||
BPUM_2850        330 CATGCAGAAATTTATCAATGACTTTTCGCATTCTAAAACATTTACTTGGA    379

BSNT_04678___    380 TGATGAACCAGGATTATGTATCGATATCAAAAATTGAACA----GTCATT    425
                     ||||||.|||.||||||||.||..|.||||||.|||||||    |||.||
BPUM_2850        380 TGATGAGCCAAGATTATGTGTCTGTCTCAAAATTTGAACAGACGGTCGTT    429

BSNT_04678___    426 --GACAAGTTTTCTCCAAAA---CTTGCCGCAAAATATCACGTCCAGTTT    470
                       ||||    ||     |||   .||.|||.||||.||..|.||.|||.|
BPUM_2850        430 TCGACA----TT-----AAAGGCATTACCGGAAAACATTGCTTCAAGTAT    470

BSNT_04678___    471 ATCTGCGGTGTTTGGTGTCGTGACAAACATCACGCTTG--TTA----TTA    514
                     .|||||||||||||||||..|..|.||.|      |||  |||    |.|
BPUM_2850        471 GTCTGCGGTGTTTGGTGTGATTGCGAATA------TTGCCTTAGCCGTCA    514

BSNT_04678___    515 TTACTGTTCCATTTATCCTTTTTTACATGTTGAAAGACGGACACCGCTTT    564
                     |.||.|||||||||||..|.|||||.|||.||||||||||.||....|||
BPUM_2850        515 TCACCGTTCCATTTATTTTATTTTATATGCTGAAAGACGGGCATAAGTTT    564

BSNT_04678___    565 C--------CGCATTTGGCAGTAAAAATTCTACC--GGCTTCTTATCGGA    604
                     |        |.|.||   ||||     ||.||||  .||  ||||.||.|
BPUM_2850        565 CCAGACAAGCTCGTT---CAGT-----TTTTACCAATGC--CTTACCGCA    604

BSNT_04678___    605 CAGAA-GGCTTAAAGATTTTTAAAGATTTATCCGATACGCTTGCGGCATA    653
                     ..||| ||||.||| ||.||.|||||.|||..|||.|||||.||.||.||
BPUM_2850        605 AGGAAGGGCTGAAA-ATCTTCAAAGAATTAAACGACACGCTCGCAGCTTA    653

BSNT_04678___    654 TTTCCAGGGGCAGCTGTTAATCTGTCTTTTTGTCGGAACAGCGTGTTTTA    703
                     ..|.|||||||||.|..|..|||||.|.|||||.|||...||.|||||||
BPUM_2850        654 CATACAGGGGCAGATTATTGTCTGTTTGTTTGTTGGAGTCGCTTGTTTTA    703

BSNT_04678___    704 TCGG---CTATTTAATTGCCGGACTGCCGTATGCCCTGATTCTTGGGATT    750
                     |.||   ||..||||||   ||..||...|||||.||.|||||.||.|||
BPUM_2850        704 TTGGATACTTATTAATT---GGTGTGAAATATGCGCTTATTCTCGGTATT    750

BSNT_04678___    751 GTCATGGCGATTACCAATATCATTCCCTATGTCGGGCCTTTTCTCGGTGC    800
                     .||||.|||.|.||.|||.|.|||||.||..|.||.||.|.|||.||.||
BPUM_2850        751 ATCATTGCGGTGACAAATGTGATTCCATACCTTGGACCATATCTTGGCGC    800

BSNT_04678___    801 CGCGCCGGCTG---TCATTGTCGGTTTTATGGACTCGCCGGCCAAAGCGC    847
                     .||.||.||||   |.||||.|   |||.|.||.|||||.|..|||||  
BPUM_2850        801 GGCACCTGCTGTACTGATTGCC---TTTCTTGATTCGCCTGGAAAAGC--    845

BSNT_04678___    848 TGTTTGCGATTATT----GTGGTCGTCA------TCGTTCAGCAGCTGGA    887
                             |.||.|    |||.|.||||      |.||.|||||..|.||
BPUM_2850        846 --------AGTAGTGACAGTGATTGTCATTCTTGTTGTGCAGCAAATTGA    887

BSNT_04678___    888 CGGAAACCTGCTGTC--TCCTCTTGTGATC---GGGAAGCGGCTGAATAC    932
                     ||||||     ||||  |.|||...|||||   ||.||.||.|||||.||
BPUM_2850        888 CGGAAA-----TGTCATTTCTCCATTGATCATTGGAAAACGTCTGAACAC    932

BSNT_04678___    933 CCATCCGCTTACGATTATTTTGCTGTTAATCGGAGCGGGAAGCTTCGGCG    982
                     .|||||..|.||.|||||..||.|.|||||.||.||.||||||||.||||
BPUM_2850        933 ACATCCTTTGACCATTATCCTGTTATTAATTGGGGCAGGAAGCTTTGGCG    982

BSNT_04678___    983 GAATTCTCGGCATGATTTTAGCGGTGCCGGTTTATGCGGTAGTGAAGGCG   1032
                     |.||.||.|||||||||||.||.|||||.||.||||||.|..|.||.|||
BPUM_2850        983 GCATCCTTGGCATGATTTTTGCAGTGCCTGTCTATGCGCTGCTCAAAGCG   1032

BSNT_04678___   1033 TTCTTCCTGAATATTGTCCGCTTGATCAAGCTTCGCCAGCGGTCACGACT   1082
                     .||..|||||||||||||.|.|||.|..||||.||.|||||.||.||   
BPUM_2850       1033 ATCACCCTGAATATTGTCAGATTGGTTCAGCTGCGTCAGCGCTCTCG---   1079

BSNT_04678___   1083 CGAAGA---------AAACGCAAAGCCAGCTGAATAG   1110
                     |.||||         |||||...||            
BPUM_2850       1080 CAAAGAGCAGCACTTAAACGTCTAG------------   1104


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