Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04688 and BPUM_2856
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:28
# Commandline: needle
# -asequence dna-align/BSNT_04688___yueB.1.24716.seq
# -bsequence dna-align/BPUM_2856.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04688___yueB-BPUM_2856.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04688___yueB-BPUM_2856.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04688___yueB
# 2: BPUM_2856
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3527
# Identity: 1932/3527 (54.8%)
# Similarity: 1932/3527 (54.8%)
# Gaps: 976/3527 (27.7%)
# Score: 4710.5
#
#
#=======================================
BSNT_04688___ 1 ATGACAGAACAACGAAAAAGCTTGATCAAGTTAATATCCGCCG-TCATCA 49
||||||||.||.|.||||||||..|||||..|.|||| ||.|| |.||..
BPUM_2856 1 ATGACAGAGCAGCAAAAAAGCTCCATCAAAATCATAT-CGACGATGATAT 49
BSNT_04688___ 50 TCATTTTGCTGCTGCCGGTGTTGTTTTTCCGATTTATCGGAGACGACCC- 98
|.|||.||.|.||||||||.||.|||||||...|.||.|||||.||.||
BPUM_2856 50 TGATTCTGGTTCTGCCGGTTTTATTTTTCCACCTCATTGGAGATGATCCG 99
BSNT_04688___ 99 ----AACGAAAAAAGCAGTCAATTCCACCCGACAAATCGCGGTGGTGAAT 144
|||..|||||| |||.||||.||..|.||.||.|||||.|||
BPUM_2856 100 GCAAAACAGAAAAAG-----AATGCCACACGTAATATTGCTGTGGTCAAT 144
BSNT_04688___ 145 GAAGACACAGGCGTATTGAGTGATGAGGTAAAGTCTGATGAAGAGGACAA 194
||.||.|..|| |..|||..||||| ||.||
BPUM_2856 145 GAGGATATGGG----------GGCGAGCGAAAGT-----------GAAAA 173
BSNT_04688___ 195 ATCCGCCCAGTTCGG-CAAG--GAAGTAGCGGCCGT-TCTGGGTGAACGT 240
..||||.|..||||| |||| |..||.||.|||.| || .||.|||
BPUM_2856 174 CACCGCTCGTTTCGGACAAGATGTCGTCGCTGCCTTATC----AGAGCGT 219
BSNT_04688___ 241 CCTGATTATTCGTGGACGGTCGTAAACCGAAGCGCGGCCGAGACCGGTCT 290
||.||||||.|.|||||.||.||.|||||.||.|||||.||.| .|
BPUM_2856 220 CCAGATTATACATGGACTGTAGTGAACCGGAGTGCGGCGGAAA-----AT 264
BSNT_04688___ 291 CGCTTCAA----AGAAA-TACGATGCGATTGTCTACATTCCCTCAGACTT 335
.|.||.|| ||||| ||.||.||..|..||||.|||||.||.||.||
BPUM_2856 265 GGATTGAAAAGCAGAAAGTATGACGCTGTCCTCTATATTCCGTCTGATTT 314
BSNT_04688___ 336 CTCAAAAAACATTTTGAGCTATGACAAAGACCATCCTCAAAAAGCAACGC 385
|||.|||||..|..||||||||||.||||||||||||.|.||.|||.|..
BPUM_2856 315 CTCTAAAAATGTGCTGAGCTATGATAAAGACCATCCTGAGAAGGCATCCA 364
BSNT_04688___ 386 TCGAATTCAGCATTCAAGATAACCTGAATGCGGTTAACAAAGAAAAAGTT 435
|..||||...||||||||||.|.||.|||.|.||.||.|||||.|||||.
BPUM_2856 365 TTCAATTTTCCATTCAAGATCAGCTCAATTCAGTCAATAAAGAGAAAGTG 414
BSNT_04688___ 436 CAGCGTGAGCTTGAGGATGCCCAAAAGACAATGAACAAAAAAATGTCGGC 485
||..|.|||||.||..||||.||.||||.||||||..||.|.||||||.|
BPUM_2856 415 CAAAGAGAGCTGGAAAATGCGCAGAAGAAAATGAATGAACAGATGTCGAC 464
BSNT_04688___ 486 CTTATACTGGAATTTTGTTTCACAAAAAGTGGACAACATCAGAGGAGAAT 535
.|||||.||||.||||||.|||||..||.|.|.|||..|.||||.|||.|
BPUM_2856 465 GTTATATTGGAGTTTTGTATCACAGGAAATCGGCAATGTTAGAGAAGAGT 514
BSNT_04688___ 536 TTGACAAGATCGTCAATAAAGAATCTGAATTCCAGAATGTCATGTACAAC 585
||||..|.||.|||...||||||..|||||||||.||....|||||.|||
BPUM_2856 515 TTGAGCATATTGTCGGCAAAGAAGTTGAATTCCAAAACACGATGTATAAC 564
BSNT_04688___ 586 TTTTACAAACCAAGCTCTAATGATTTAGCA-----GGTGAAATCA--AAC 628
||.||.||.||.|.|||.||..|..||.|| ||| ||| |||
BPUM_2856 565 TTCTATAAGCCGAACTCAAACAAACTATCAGATGCGGT----TCAGCAAC 610
BSNT_04688___ 629 AGCAAAAAGACTTAATCGATGAGCTGAAGAAAT-CAATGAATGAAGCGCA 677
||.|.|||.| |||.||.|| .|.||.|||| ||||||..||..||||
BPUM_2856 611 AGAAGAAACA---AATAGAAGA-ATTAAAAAATGCAATGACCGACTCGCA 656
BSNT_04688___ 678 AGGCACGA--CAAAAGAAAAAGCTTC----TACAGCGGAGGAAGCCAAAA 721
|| |||.|.|||.|...|| |||..|.||.|||| ||||.
BPUM_2856 657 ------GAAGCAATATAAAGACGGTCTGAGTACGACAGAAGAAG-CAAAG 699
BSNT_04688___ 722 ATACGCTGAAAGAATTCATTGATA----CAGTTGAAAGATACAAAGAATA 767
|..|..|.||||.||| ||| || .|||.||...||||.|..|.||
BPUM_2856 700 AACCAGTTAAAGGATT--TTG-TAAAAGTAGTCGATCAATACCAGCAGTA 746
BSNT_04688___ 768 TCAAGAAAATCAGAAAAAGCTGCTTTTG---GCAGCCCAAGATTCAACA- 813
||||||.||.| |||||...||.||| ..|||.||| ||.|||
BPUM_2856 747 TCAAGACAAAC---AAAAGGACCTCTTGATCAAAGCACAA---TCGACAA 790
BSNT_04688___ 814 --CAGCAGCAAATCCGG-----------ACAGGTCTGGATGCCATCCAAG 850
||..|.|||||.|.| |||| ||.|.||..||.||
BPUM_2856 791 ACCAAAAACAAATTCAGCAGGGGCTCAAACAG--CTCGCTGATATTCA-- 836
BSNT_04688___ 851 CACAGCAAAAGG--CGAATCAG-TTCAGCGAACGCATGAGCGGATTGGCA 897
|.|.|||||.| || ||| |||||.||.|..|||.|.|||.|...|
BPUM_2856 837 -AAACCAAAATGCCCG---CAGCTTCAGTGATCAAATGGGTGGACTCAAA 882
BSNT_04688___ 898 ACTGGGATTGGCCAAGCGAAG-ACA----CAGCT--------CGGACTTA 934
||.|..|| ||| ||.|| ||| |||.| |||||
BPUM_2856 883 ACAGATAT----CAA-CGGAGTACAAAGTCAGTTAAACACAACGGAC--- 924
BSNT_04688___ 935 CTAG-----TC----TTGCTCTGAAAAGTGCAGAACAGACAAGGCAAGGT 975
|| || .||.|| ||||||..|||..|||| ||.|
BPUM_2856 925 --AGCGCCATCCAAACTGTTC--AAAAGTCGAGAGAAGAC---GCTA--- 964
BSNT_04688___ 976 CAAGTTCCTTTACAAGAAAT----GGGCATGAAAAAAATTCAAGAAGATA 1021
||||| |||.||| ||| |||.|.|.| |..
BPUM_2856 965 ----TTCCT----AAGCAATCAACGGG----------ATTAACGGA-ACT 995
BSNT_04688___ 1022 TGTTCAGTACATTTCTTGAACGTTATGAAACTCAGTATACTGCAACTAAA 1071
|||..|| |||| |||||.|
BPUM_2856 996 TGTAAAG------------ACGT-------CTCAGGA------------- 1013
BSNT_04688___ 1072 ATCCAAAAC---TTAAATCAATTGCAAGATAAGATAGTGAATCTTCGTCC 1118
|.||| ||||| ||| || |||| |.||
BPUM_2856 1014 ----AGAACTGATTAAA-------------AAG-TA-TGAA-----GACC 1039
BSNT_04688___ 1119 GGCTTTAATAAAACCAGAGGAAGACGATCAAAAGCACGATAATTCTAA-- 1166
| |||.|.| ||||||.|||.|| |||| ||
BPUM_2856 1040 G---TTACTTA--------GAAGACTATCGAA------ATAA----AATA 1068
BSNT_04688___ 1167 -------TGAAGAGAA---TAATGACAAGGAAG--AAGA-TACAACTGAA 1203
||.|||.|| ||.||.||| .||| |||| | |||
BPUM_2856 1069 TCAGCCTTGCAGACAAAGCTATTGGCAA-AAAGGCAAGAGT-----TGA- 1111
BSNT_04688___ 1204 GAAATCAAATTGGACTTGGAGCAACAACGAGATGA-ACTCAATAATGTTG 1252
||||| |||| .||| .|||
BPUM_2856 1112 ----------TGGAC---GAGC---------CTGAGCCTC---------- 1129
BSNT_04688___ 1253 CAGCTGAAATCAAAGATATTTCTGAAGGATTAAAAGAACCAGAACTAAAT 1302
|||.||| ||||||||
BPUM_2856 1130 CAGTTGA------------TTCTGAAG----------------------- 1144
BSNT_04688___ 1303 AACCCAACAATGCCGGGGAGCGAAGACCCGACAAACGACGACAACACCA- 1351
|||.|||| |||.| |.|.||
BPUM_2856 1145 ---------ATGACGGG--------------CAATC-------AGATCAA 1164
BSNT_04688___ 1352 -ATAATAAAAATCCAACAAGTG--GCGATCAGCCGACAGATGGAAATGAT 1398
|||||.||||.|| || |.||| |||||
BPUM_2856 1165 GATAATGAAAACCC------TGAAGAGAT-----------TGGAA----- 1192
BSNT_04688___ 1399 GGGTCAAC--AGATGACAGTACACAAATGAACCCT--GAAA--TAAAT-- 1440
|.||| |||||| || |.||||||||.|.|| .||| |.|||
BPUM_2856 1193 ---TTAACCTAGATGA-AG-AAACAAATGAGCTCTCGCAAATTTCAATAG 1237
BSNT_04688___ 1441 -AATGAA-------GCAGA-CAATCA--AGGTCAACAAAA---------T 1470
|||||| ||||| ||||.| || ||||..| |
BPUM_2856 1238 AAATGAACGACCTTGCAGATCAATTAGTAG---AACAGGAGACACCGCCT 1284
BSNT_04688___ 1471 TCTTCCGA--------------GAAAACTAATGATTTAAAT-------GG 1499
|||||.|| ||.|| ||||||..|||| .|
BPUM_2856 1285 TCTTCTGAAGATGGGGAAGTAGGAGAA--AATGATGAAAATCCTGCTCAG 1332
BSNT_04688___ 1500 CAAAACAGAGA-CGACAGCACAATCAAAAGCCGCCCTTCGTATAATTCAG 1548
| ||||.| ||.||||| |.||||||
BPUM_2856 1333 C----CAGATACCGGCAGCA---------------------AGAATTCA- 1356
BSNT_04688___ 1549 CTCGCTGATGAAAACGATGGGTCACAGGTTGACGATTCTAAAAACGAATC 1598
||.||||.|||| |||||
BPUM_2856 1357 ---------------------TCGCAGGATGAC----CTAAA-------- 1373
BSNT_04688___ 1599 AGATATTTCGATAGCAAAAAAACGTCTGAATGCT-GC--AGCTGAACAAA 1645
|||| .|||.|| || || ||.||||...|
BPUM_2856 1374 ------------AGCA-------CTCTCAA--CTCGCTTAGATGAAGTGA 1402
BSNT_04688___ 1646 TACAGAAAAT---AGAG------------------GAAGAACTTAAAGAA 1674
.|.||||||| |||| ||.|||.|.|||||.
BPUM_2856 1403 AAAAGAAAATTCAAGAGAAAGCTTCCGCTCATAATGATGAATTAAAAGAC 1452
BSNT_04688___ 1675 AAGCAAGAGGAGCATAAT-AGTA---AGGTTGAGAAGCGCATTGAGAAAC 1720
| |||.||..|| ||| |||| ||.|.||||||| ||..||||
BPUM_2856 1453 A---AAGTGGGTCA-AATGAGTAAAGAGCTCGAGAAGC---TTACGAAA- 1494
BSNT_04688___ 1721 TGGATAAAGAAATAAAAGATCTAAATGA------TAAGGTTGACTCATTA 1764
|||| .|.|||||.|..|||.|| ||.|||| ||
BPUM_2856 1495 -----AAAG-TAGAAAAGCTTGAAAAGATGTTCCTATGGTT-AC------ 1531
BSNT_04688___ 1765 AACATCAAAATTAATGACTTAACATCAAAATTTAATGATATCAATGATCA 1814
||.|||.|.| |||||...|..|| |||||.|||||....||
BPUM_2856 1532 AAGATCGATA-TAATGTGATTCCA---------AATGAAATCAAAAGCCA 1571
BSNT_04688___ 1815 GTTTAATAAATCTTCTTTATTAATTAGTGAAAAGGAAAAAGAGATTTTAA 1864
| .||||..||.|.|||| |.||| |.|||||||
BPUM_2856 1572 G------GAATCCACTATTTTAA-----GCAAA-GTAAAAGAG------- 1602
BSNT_04688___ 1865 AAATTTTACGGAATAACGGTGAAAAAGATCGCT---TAGAACAATT---- 1907
|.|| ||||..||||...|.||.| |.||.||.||
BPUM_2856 1603 --------CTGA--AACGCAGAAACTCACCGATTGGTGGAGCATTTAATG 1642
BSNT_04688___ 1908 ---ATCTTCAGTTTTTACTAATACAGTAGATACAAAAAATGTTTCAGAC- 1953
||| |||||...||.|.|.|.||.|||||| ||| ||
BPUM_2856 1643 ACAATC-----TTTTTGAGAAAAAATTCGAAACAAAA------TCA-ACA 1680
BSNT_04688___ 1954 ------------TTAATGAAGTACTACAA---------TTATCTATATTT 1982
||||||.||||.|.||| |.|.|||.|..|
BPUM_2856 1681 AGAACTAAAAAATTAATGGAGTATTCCAATCAACTCTCTCAGCTAGAGCT 1730
BSNT_04688___ 1983 GTATG-----AAAAGACT------------TTGACTGGTTCTCTAGATGT 2015
| ||| |||.|.|| .|.||| .||||.||.|||
BPUM_2856 1731 G-ATGATCGCAAACGTCTATCAACCATCTAATAACT-CTTCTTTATATG- 1777
BSNT_04688___ 2016 AGGGTCTATGTCGCTCTTAAGTAGAGACGCTATCCAGGGCCAGCAGGGCA 2065
.|.|..|||.||||| .|||||||
BPUM_2856 1778 ------------ACACAAAAGAAGAGA--ATATCCAG------------- 1800
BSNT_04688___ 2066 ACGTCAAATCCATCCTGGCCCTCTCACCTGCAGAATCAGCCAGCTGGGAA 2115
||||||||..||.||..|...|..|||.|.|..|.||||||.
BPUM_2856 1801 --------TCCATCCTCTCCATCAAAAAAGAGGAAACGGAAAACTGGGAT 1842
BSNT_04688___ 2116 GCTCTC-AAAAACAACACGATG----CAAACTGATGAAG-----ACATTA 2155
.|.||| |||||||| |.|.|| ||||| |||||.| ||.||.
BPUM_2856 1843 ACGCTCAAAAAACAA-ATGCTGACGTCAAAC-GATGATGTGTCTACTTTT 1890
BSNT_04688___ 2156 ACAGCTTCATCGACGGA-ATGACCAAATTTGCGGGTGACTA--CAGCGGC 2202
| ||.|| || |||...||.|||.|.|.||.||| |||
BPUM_2856 1891 A----TTGAT-----GAGATGCAGAAGTTTTCAGATGGCTATGCAG---- 1927
BSNT_04688___ 2203 TTTATTCGT---GACTCTCAAGCAGG------TGTTCTCGACGAACTGAC 2243
.||.|.| ||||| |||||| || |||| |.
BPUM_2856 1928 --AATACATTTCGACTC---AGCAGGCAAGCATG--------GAAC--AG 1962
BSNT_04688___ 2244 GAA--------AATCTCTGAAAGTGCCGCAAAA----GCGTCAGAACAGC 2281
||| |||.|||||||||| ||.|.|| ||| ||
BPUM_2856 1963 GAATTAAACACAATTTCTGAAAGTG-CGGACAATGTTGCG---GA----- 2003
BSNT_04688___ 2282 TTGTAACGGGCGCAACACAGGAATCTGCGACGTTCAG------CAACGAT 2325
|.||..|||..|.|| |||| || |.||| ||.||
BPUM_2856 2004 --GCAAATGGCTGATCA-AGGA------GA--TGCAGTGTATACAGCG-- 2040
BSNT_04688___ 2326 GGGCTGTCTGGCA---CCATGGCACTGAGTGTCCAAGATACGGTCGGCCA 2372
|..||..|.|||| |.||.|...|.||||..||.|||.|..|.||.||
BPUM_2856 2041 GACCTTGCAGGCAGTTCAATTGTTGTCAGTGCGCAGGATTCAATTGGTCA 2090
BSNT_04688___ 2373 GGAAGTGCTGCAAATGTCAGACATGATGGGTTCATTGTCTGATCGCC--- 2419
.||||||||.|.|.|.||.||.|..|||.||||.||..|.||.||||
BPUM_2856 2091 AGAAGTGCTTCGACTTTCTGAAAATATGAGTTCGTTAACCGACCGCCAAA 2140
BSNT_04688___ 2420 ----AGTCAGGCATCATTGATTACACAACCAACA-TGCAGCAAAGCGT-- 2462
||| |||| |||||.||.|..|||| ||.|| |.||.||
BPUM_2856 2141 AAGGAGT--GGCA-----GATTATACGAATAACATTGAAG-AGAGTGTGA 2182
BSNT_04688___ 2463 CAATGATGTTCAAGCGAAAGCCGACAC-CTTAAACAACAACTGGGGGAAA 2511
|||.| ||.||||..|||||.||.|| ||.||..|| ||||||.|.||.
BPUM_2856 2183 CAACG--GTCCAAGAAAAAGCGGATACGCTGAATGAA-AACTGGAGCAAG 2229
BSNT_04688___ 2512 AATGTCGCCTCCACGAAACTAGTGC-GCAA----TGACGTATACGGCATA 2556
|||||....|||||||||||.||.| |||| ||| |.||.||.
BPUM_2856 2230 AATGTTCATTCCACGAAACTTGTTCAGCAAGATTTGA-----AAGGTATT 2274
BSNT_04688___ 2557 CTCGGAAACACATT-AGTAGA--CGGGCAA-AACAATGGCTATGTATATG 2602
.|.||||||||||| ||| || ..||||| |.||| ||||||.|||.
BPUM_2856 2275 TTAGGAAACACATTAAGT-GATCAAGGCAACAGCAA---CTATGTGTATA 2320
BSNT_04688___ 2603 ATTACTTGGCGAATCCGCTTAAAATCAGCGGAGAGGTTCCGGAAGAAAAA 2652
||.||||.||.||||||||.||||||||.||.||.||.||.|||||||||
BPUM_2856 2321 ATCACTTAGCCAATCCGCTGAAAATCAGTGGTGATGTACCAGAAGAAAAA 2370
BSNT_04688___ 2653 ATTCAGACGGTACCTCCGGTTGTCATCCTTG-TCATTGTGTTGATCAGCA 2701
|..|||||.|||||.||.||.||||| .||| ||||||||.|||||||.|
BPUM_2856 2371 ACGCAGACTGTACCCCCAGTGGTCAT-TTTGATCATTGTGATGATCAGTA 2419
BSNT_04688___ 2702 GTCTGTTAATCGGCTATTTCAGCTCGTATTA-----CCAAAACGCACCGC 2746
||.|||||||.||||.||||||||||||||| | |||.|||.
BPUM_2856 2420 GTTTGTTAATAGGCTTTTTCAGCTCGTATTATGCGGC-----CGCTCCGA 2464
BSNT_04688___ 2747 TTCTCGTCAAAGGAGCGTTATTCGGAATTCTGAATATCCTTGTCGGACTT 2796
|.||.||.|||||.||..|.||.||.||..|.|||.|..|.|||||.||.
BPUM_2856 2465 TGCTGGTGAAAGGTGCACTGTTTGGCATCTTAAATCTATTAGTCGGGCTC 2514
BSNT_04688___ 2797 ATGATCAGCTTGTTCGGTTTGAATATTTATTCA--CTGCCGGACGATCAG 2844
|||||||||||.||.||..|.||.||||| || ||..|.||.|||||.
BPUM_2856 2515 ATGATCAGCTTATTTGGACTAAACATTTA--CAAGCTTGCAGATGATCAA 2562
BSNT_04688___ 2845 ACGATTAAGTGGTCGGTGTTTACGATT---CTATT----GCTGGTCGCAA 2887
.|||||.|||||||..|.||.|||||| ||||| |||.||
BPUM_2856 2563 GCGATTCAGTGGTCCATTTTCACGATTTTACTATTAGTGGCTTGT----- 2607
BSNT_04688___ 2888 GCTCTGCCTTCATCCGGACGGCATTCAGATTCGGATCAATCCCTGGCTGG 2937
||.|||||.||.||.|||||.|||..||||||.||.||..|.||.|||
BPUM_2856 2608 --TCCGCCTTTATTCGCACGGCGTTCCTATTCGGCTCTATTGCCGGATGG 2655
BSNT_04688___ 2938 GTTGCTTCAGCAGCAATGATCCTATTCTATGTCGCACCGCTTATTGATTT 2987
.|.||..||.|.||..|.||..|.||||.|||||||||..|.||||||||
BPUM_2856 2656 ATGGCAGCAACGGCGCTTATTTTCTTCTTTGTCGCACCATTAATTGATTT 2705
BSNT_04688___ 2988 GATCATGCCGAACTTTACATTTGA--AGATCCGGTTTCGAAAGTATA--T 3033
|.|.|||||||| |||.|||||.| | |.||.||..|..|.||.|| |
BPUM_2856 2706 GGTGATGCCGAA-TTTCCATTTCACCA-ACCCAGTGACAGACGTGTACTT 2753
BSNT_04688___ 3034 ATCGACATCCAGTACGGTACTGG---GCACTTGTTTACAATGGGAATAAC 3080
.|| ||||||.||.||.|.||| .||| |||..||||||
BPUM_2856 2754 GTC--CATCCAATATGGAAATGGAGATCAC---TTTGGAATGGG------ 2792
BSNT_04688___ 3081 AGTTCTGCTGAT--CATTACGGTGATT---GCCGTGGCTCTGCCGCTGAT 3125
|| |||| .|||| .||||| .|.|| .||||.| .||.|
BPUM_2856 2793 -----TG-TGATAGGATTA--ATGATTTTAACTGT-CCTCTTC--ATGGT 2831
BSNT_04688___ 3126 TATCCGGTTGATGGCTGAACACACAGC---AGAAAGCGATGAAACGTATG 3172
.||||.|||..|| |||.||| .|||| |||.|||||.|.|
BPUM_2856 2832 CATCCCGTTTGTG-------ACAAAGCTATGGAAA--GATAAAACGGAGG 2872
BSNT_04688___ 3173 AAGCGTGA------------------- 3180
|| |||||
BPUM_2856 2873 AA-CGTGATGTGACTCATGAGGCTTAA 2898
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.