Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04693 and BPUM_2859

See Amino acid alignment / Visit BSNT_04693 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:30
# Commandline: needle
#    -asequence dna-align/BSNT_04693___yukD.1.24716.seq
#    -bsequence dna-align/BPUM_2859___yukD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04693___yukD-BPUM_2859___yukD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04693___yukD-BPUM_2859___yukD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04693___yukD
# 2: BPUM_2859___yukD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 244
# Identity:     173/244 (70.9%)
# Similarity:   173/244 (70.9%)
# Gaps:           8/244 ( 3.3%)
# Score: 571.0
# 
#
#=======================================

BSNT_04693___      1 ATGTATATTGATATTACAATAGATTTGAAACATTATAACGGCAGTGTCTT     50
                     .|||||||.||||||||.||.||.||.|||.|||||.|.||||||||.||
BPUM_2859___y      1 GTGTATATCGATATTACCATCGACTTAAAAAATTATGATGGCAGTGTGTT     50

BSNT_04693___     51 TGATCTCAGATTGTCAGATTACCACCCGGTGAAAAAAGTAATTGATATTG    100
                     ||||.|.|||.|.|||.||||....|...|.|||.||||.||..||||.|
BPUM_2859___y     51 TGATTTGAGACTATCAAATTATTTACATATTAAACAAGTCATCCATATCG    100

BSNT_04693___    101 CTTGGCAGGCCCAAAGCGTATCT--ATGCCCCCGCGCGAAGGGCACTGGA    148
                     |.|||||||  ||||.|..||||  .|.||...|||.|||||...||||.
BPUM_2859___y    101 CCTGGCAGG--CAAAACAAATCTCACTTCCTAAGCGAGAAGGCGGCTGGG    148

BSNT_04693___    149 TCAGAGTGGTGAACAAGGATAAG--GTGTTTTCCGGAGAATGCAAGCTGT    196
                     |..||||.||.||.|||  .|||  ||||||||.||.||||..|||||||
BPUM_2859___y    149 TGCGAGTAGTCAATAAG--AAAGCTGTGTTTTCAGGCGAATATAAGCTGT    196

BSNT_04693___    197 CTGATTGCGGCATTACAAACGGAGACCGGCTTGAAATATTATGA    240
                     |.||.||.||.||.||.|..||||||.||||.||||||.|||||
BPUM_2859___y    197 CAGACTGTGGAATCACCACAGGAGACAGGCTGGAAATACTATGA    240


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