Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04715 and BPUM_2865

See Amino acid alignment / Visit BSNT_04715 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:30
# Commandline: needle
#    -asequence dna-align/BSNT_04715___yuiF.1.24716.seq
#    -bsequence dna-align/BPUM_2865.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04715___yuiF-BPUM_2865.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04715___yuiF-BPUM_2865.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04715___yuiF
# 2: BPUM_2865
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1347
# Identity:     973/1347 (72.2%)
# Similarity:   973/1347 (72.2%)
# Gaps:          36/1347 ( 2.7%)
# Score: 3333.5
# 
#
#=======================================

BSNT_04715___      1 ATGAATGCAGTCGTCATCGCAGTCCTGCTTATGCTTG-TATTAAGCCTGC     49
                     |||||||||||.||.||.||.||.||..|.||| ||| ||||||||.|||
BPUM_2865          1 ATGAATGCAGTTGTGATAGCGGTTCTTTTAATG-TTGATATTAAGCTTGC     49

BSNT_04715___     50 TGCGTGTCAATATTGTTATCGCATTAATTATAGGCGCCTTGGCCGGCGGG     99
                     ||||.||||||.|.|||||.||..||....|.||.||.||.||.|||||.
BPUM_2865         50 TGCGGGTCAATGTGGTTATTGCCCTAGCACTTGGTGCTTTAGCTGGCGGA     99

BSNT_04715___    100 TTAACAGGCGGGCTCGGTCTTGGCGAAACGGTTAAAGCTTTCACAGACGG    149
                     .|..||||.||..|.||.|||||.|.|||.|||.||||.||.||.||.||
BPUM_2865        100 CTTGCAGGTGGATTAGGCCTTGGAGGAACAGTTGAAGCCTTTACGGATGG    149

BSNT_04715___    150 TCTCGGCGGAAATGCCACCGTTGCAGTTAGCTATGCCATGCTTGGCGCGT    199
                     ||||||.||||||||.||.||.||..||||.|||||..|..|.||.||.|
BPUM_2865        150 TCTCGGAGGAAATGCGACAGTGGCGATTAGTTATGCGCTATTAGGGGCAT    199

BSNT_04715___    200 TTGCCGCCGCTTTGACGAAAACGGGTCTTCCGGACGCAATGGTGGAAGCC    249
                     ||||.||.||..||||||||||.||||||||.|||||.|||||.||||..
BPUM_2865        200 TTGCTGCGGCGCTGACGAAAACAGGTCTTCCAGACGCCATGGTTGAAGGG    249

BSNT_04715___    250 TCCGTTAAATTAATCGGAAATAAAGAAGATTCTCGAAAAAAAGCACTGTC    299
                     .|.||.||..|..|.|||||..|||..||.||..|||.||||.||.|.||
BPUM_2865        250 GCAGTGAAGCTTCTAGGAAAAGAAGGCGACTCAAGAAGAAAAACATTATC    299

BSNT_04715___    300 TAAGGTGCTGATTGTGCTGATTATTTTAATTGTATCTTGTTTTTCGCAAA    349
                     .||.||.|||||..|.||..|.|||||.||.||||||||||||||.||||
BPUM_2865        300 AAAAGTACTGATCATTCTTGTGATTTTGATCGTATCTTGTTTTTCACAAA    349

BSNT_04715___    350 ACGTCGTTCCGGTTCACATCGCGTTTATCCCGGTGCTGATTCCGCCGCTT    399
                     ||||||||||.||||||||.||.|||||.||.||..|.||||||||..|.
BPUM_2865        350 ACGTCGTTCCAGTTCACATTGCCTTTATTCCAGTCTTAATTCCGCCATTA    399

BSNT_04715___    400 TTGAAAATCTTTAATGAACTTGAAATGGACCGCCGTCTGATCGCGTGTGT    449
                     ||.|||.|.|||||.||.|||.||||.||||||.|.|||.|.||||||||
BPUM_2865        400 TTAAAAGTGTTTAACGAGCTTCAAATTGACCGCAGACTGCTAGCGTGTGT    449

BSNT_04715___    450 AATTACATTTGGCTTAACGGCTCCTTATATTTTGCTTCCGGTCGGTTTCG    499
                     .||.||.||.||..|.||.||.||.||||||||.|||||.||||||||.|
BPUM_2865        450 CATGACCTTCGGACTCACTGCACCATATATTTTACTTCCAGTCGGTTTTG    499

BSNT_04715___    500 GCCAAATCTTCCAAGGCATGCTGAAGGACAATATGGCGGATGCCGGGTTA    549
                     |.||.||.|||||.||.|||||....||.||.|||...||.||.||.|||
BPUM_2865        500 GACAGATTTTCCACGGAATGCTTCGTGATAACATGAAAGAGGCAGGATTA    549

BSNT_04715___    550 AACGTTCCGCTTGCTGATATTCCGTAC--GCACTGATTATTCCAGTTGCA    597
                     |..||.|...|..|.|||.||||  ||  ||..||.|||||||.||.|..
BPUM_2865        550 ACTGTACAATTATCAGATGTTCC--ACTAGCCATGCTTATTCCTGTAGGG    597

BSNT_04715___    598 GGTATGGTTGTCGGCCTTATTTTATCAGTGATCGTATACCGTAAACCGAA    647
                     ||.|||.|..||||.|||.||.|.|||.|..||||.||.||.|||||.|.
BPUM_2865        598 GGCATGATGCTCGGACTTCTTATTTCACTTTTCGTGTATCGGAAACCAAG    647

BSNT_04715___    648 ACAATATGA--AACAAAAGACATTTCA--GGTGCAGAAGCATCGCCATAT    693
                     ...||||||  |.|    ||.||.|||  |..|.||||..|||..|.|||
BPUM_2865        648 GGTATATGAGGATC----GAGATATCACGGACGTAGAAAAATCAGCTTAT    693

BSNT_04715___    694 ACGAGAAAAAG--TATTGGTATCGCGGTTCTAGCCATTGTTGTGTCACTC    741
                     ||||.|||.||  |||||  .|.||.||.||.||.||..||||.|||||.
BPUM_2865        694 ACGAAAAAGAGTTTATTG--CTTGCAGTGCTGGCTATCCTTGTTTCACTT    741

BSNT_04715___    742 GGCGTCCAGCTTTACTTATCTC--AGACTTTGGGAGTAGAAGGAATGATT    789
                     ...|||||||||||.|||||||  ||.|||  ||.||.|||||.|||||.
BPUM_2865        742 ATTGTCCAGCTTTATTTATCTCAAAGCCTT--GGTGTGGAAGGTATGATC    789

BSNT_04715___    790 ATGGGGGCGCTCGCTGGTCTGATTGTTCTGTTTGTCAGCGGTGTGATGAA    839
                     .|.||.||.||.||.||.||..||||||||||||.||..||..|||||||
BPUM_2865        790 TTCGGTGCACTGGCAGGCCTTCTTGTTCTGTTTGCCACAGGCATGATGAA    839

BSNT_04715___    840 GCGTGATGAAGCGGACTCACTGATTACTGATGGAATGGTTTTAATGGCCT    889
                     .||.|||||||||||..|.||.||||||...||.|||..|.|.|||||.|
BPUM_2865        840 ACGAGATGAAGCGGATGCGCTAATTACTTCCGGTATGAATATGATGGCAT    889

BSNT_04715___    890 TTATCGGCTTTGTCATGCTTGTTGCAGCCGGGTTTTCAAACGTATTGACG    939
                     ||||||||||||||||||||||.||.||.||||||.|.||||||||.|||
BPUM_2865        890 TTATCGGCTTTGTCATGCTTGTAGCGGCTGGGTTTGCCAACGTATTAACG    939

BSNT_04715___    940 AAAACCGGAGATGTCGAGTCACTGGTCAAAACGTCAGCTGGTTTTATCGG    989
                     |||||.||||||.|.||...|||.||.|||.|.||..||...||.||.||
BPUM_2865        940 AAAACAGGAGATATTGAACAACTAGTGAAAGCATCTTCTCAGTTCATTGG    989

BSNT_04715___    990 ACACAGTCA----GTCCTTGGGCG--CATTGCTGATGCTCATT-GTCGGC   1032
                     |.|||.|||    ||     .|||  |||| .|.||||| ||| ||.||.
BPUM_2865        990 AAACAATCAAAGCGT-----AGCGGCCATT-TTAATGCT-ATTAGTTGGT   1032

BSNT_04715___   1033 TTATTAATTACAATGGGGATCGGATCTTCTTTTGCGACCATTCCTGTTAT   1082
                     |||.|..|.||||||||||||||.||.||.||||||||.|||||..|.||
BPUM_2865       1033 TTACTTGTGACAATGGGGATCGGTTCATCCTTTGCGACGATTCCAATCAT   1082

BSNT_04715___   1083 CACAACCATTTTCGTGCCTCTATGCATGCAGCTTGGATTCAGCCCGATGG   1132
                     .|||||||||||.||.||..||||.|||||.||.|||||.|||||..|.|
BPUM_2865       1083 TACAACCATTTTTGTTCCGTTATGTATGCACCTAGGATTTAGCCCACTAG   1132

BSNT_04715___   1133 CAACGATTGCGATTATCGGGGCTGCTGCTGCGCTTGGCGATGCCGGTTCA   1182
                     |.||.|||||.|||||.||..|.|||||.||..||||.|||||.||||||
BPUM_2865       1133 CTACCATTGCTATTATTGGTTCAGCTGCGGCTGTTGGGGATGCAGGTTCA   1182

BSNT_04715___   1183 CCTGCCAGTGACAGTACGCTTGGGCCGACTTCAGGTTTGAGTGCGGACGG   1232
                     |||||.|||||||||||||||||.|||||.||.||.||||.|..|||.||
BPUM_2865       1183 CCTGCAAGTGACAGTACGCTTGGACCGACATCTGGATTGAATATGGATGG   1232

BSNT_04715___   1233 CCAGCATCACCACATTTGGGATACTTGTGTGCCGACATTTATATTTTATA   1282
                     .|||||||||||||||||||.|||||||||.||.||.||..|||||||||
BPUM_2865       1233 ACAGCATCACCACATTTGGGGTACTTGTGTTCCAACCTTCGTATTTTATA   1282

BSNT_04715___   1283 ATATTCCGCTTGTCATCTTTGGCTGGATTGCAGCGCTTGTTTTATAG   1329
                     ||.|||||||||||.|.||.||||||.||||.||..||.||.|.||.
BPUM_2865       1283 ATGTTCCGCTTGTCCTATTCGGCTGGCTTGCGGCAATTATTCTTTAA   1329


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