Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04717 and BPUM_2868
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:30
# Commandline: needle
# -asequence dna-align/BSNT_04717___yuiD.1.24716.seq
# -bsequence dna-align/BPUM_2868.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04717___yuiD-BPUM_2868.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04717___yuiD-BPUM_2868.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04717___yuiD
# 2: BPUM_2868
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 493
# Identity: 353/493 (71.6%)
# Similarity: 353/493 (71.6%)
# Gaps: 32/493 ( 6.5%)
# Score: 1222.0
#
#
#=======================================
BSNT_04717___ 1 ATG---GAACTTTTAACGAATTTTCCTTTATTATCAAGCCTGGCCGCAAT 47
||| |.|| |.|||||||||||..|..|..|.||.||.||.||.||
BPUM_2868 1 ATGAGCGTAC---TGACGAATTTTCCGCTGCTTGCCAGTCTTGCAGCCAT 47
BSNT_04717___ 48 TATTTTTGCTCAGGTCATCAAAGTGCCCATACAGTTTATCGTGTCCAGAA 97
..||||||||||..|..|.|||||.||.||.||.||||||.|.||.|||.
BPUM_2868 48 CTTTTTTGCTCAATTTGTAAAAGTACCGATTCAATTTATCATTTCTAGAC 97
BSNT_04717___ 98 AACTGGACTGGTCGCTGGTCACAAGCACAGGCGGCATGCCGAGCTCTCAC 147
.|||.||.||||||||..|.||||||||||||||.|||||.||.||.|||
BPUM_2868 98 GACTAGATTGGTCGCTCATTACAAGCACAGGCGGAATGCCAAGTTCACAC 147
BSNT_04717___ 148 TCCGCAGCGGTCACTGCGCTTTCTACAGGAGTAGCCTTGGAGCATGG--- 194
||||||||.||.||.||.||.||.||||.|||.||.||.|||||.||
BPUM_2868 148 TCCGCAGCCGTAACAGCACTCTCAACAGCAGTGGCTTTAGAGCACGGGCT 197
BSNT_04717___ 195 -ATTAGACTCCTCACTCTTTGCGGTTTCCGCCATTTTCGCCGTCATAACC 243
|.|| |.||..||||||||.||||||||||.||.||..|.||.|||
BPUM_2868 198 CAATA----CATCGATCTTTGCGATTTCCGCCATCTTTGCGATTATTACC 243
BSNT_04717___ 244 ATGTTTGACGCAACTGGCGT---CAGACGTCACGCCGGTGAGCAGGCAAC 290
|||||.||.|||||.||.|| |||| ||.||.||.||.|||||.||
BPUM_2868 244 ATGTTCGATGCAACAGGTGTACGCAGA---CAGGCAGGAGAACAGGCGAC 290
BSNT_04717___ 291 AGTCATTAATAAGCTTGTTATTGATTTTAACCGTTTCGTAAATGAAGCGA 340
.||..|.||.|||||.||.|..|||||||||||.||.||...||||||.|
BPUM_2868 291 TGTACTGAACAAGCTCGTAACAGATTTTAACCGATTTGTTTCTGAAGCAA 340
BSNT_04717___ 341 AGGACTTCCCTAAGGCTGCAGAGAAAGAAAAGCAAAAAAAGCTGAAAGAG 390
||.|.|||||.|..||.|.|||.||||||||||||||.||..||||||||
BPUM_2868 341 AGAATTTCCCGAGTGCGGAAGAAAAAGAAAAGCAAAAGAAATTGAAAGAG 390
BSNT_04717___ 391 CTTCTCGGACATCAGCCGATCGAAGTCTTTTTCGGAGGATTAACAGGTAT 440
|||||.||.|||.|||||||.||||||||.||.||.||.||||||||.||
BPUM_2868 391 CTTCTTGGTCATAAGCCGATTGAAGTCTTCTTTGGCGGCTTAACAGGGAT 440
BSNT_04717___ 441 TTTACTGACATTGGTACTC-GCTT--ACTTT---TTCATGTAA 477
.|||||||| |||| .||| |||.| ||||||||.
BPUM_2868 441 CTTACTGAC------ACTCATCTTAGACTATTACTTCATGTAG 477
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