Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04769 and BPUM_2884

See Amino acid alignment / Visit BSNT_04769 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:31
# Commandline: needle
#    -asequence dna-align/BSNT_04769.1.24716.seq
#    -bsequence dna-align/BPUM_2884.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04769-BPUM_2884.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04769-BPUM_2884.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04769
# 2: BPUM_2884
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 237
# Identity:     198/237 (83.5%)
# Similarity:   198/237 (83.5%)
# Gaps:           0/237 ( 0.0%)
# Score: 834.0
# 
#
#=======================================

BSNT_04769         1 ATGACTGAAGTTGAAATGAAAGAACAGGTGCAGGAAGTACTGGACAAACT     50
                     |||||||||||.|||||||||||.||.||.||||||||||||||||||||
BPUM_2884          1 ATGACTGAAGTCGAAATGAAAGACCAAGTACAGGAAGTACTGGACAAACT     50

BSNT_04769        51 TCGTCCGTTTTTACTTCGTGACGGCGGTGACTGTGAGCTTGTAGACGTAG    100
                     ||||||.|||.||.|.|||||.|||||.||||||||||||||||||.|.|
BPUM_2884         51 TCGTCCATTTCTATTACGTGATGGCGGAGACTGTGAGCTTGTAGACATTG    100

BSNT_04769       101 ATGAAGGTATCGTTAAGCTTCGTCTTCTAGGCGCATGCGGCAGCTGCCCA    150
                     |.||.||.||.||.||..|.||||||||.||.||||||||||||||||||
BPUM_2884        101 AAGATGGCATTGTGAAATTACGTCTTCTTGGTGCATGCGGCAGCTGCCCA    150

BSNT_04769       151 AGTTCAACGATTACGCTGAAAGCCGGAATTGAGCGCGCTCTTCTAGAAGA    200
                     ||||||||.|||||..||||||||||.||||||||.||..|..|||||||
BPUM_2884        151 AGTTCAACCATTACATTGAAAGCCGGTATTGAGCGTGCATTATTAGAAGA    200

BSNT_04769       201 AGTGCCGGGTGTCGTTGAAGTAGAACAAGTCTTTTAA    237
                     ||||||.||.||.||.|||||.|||||.||.||.|||
BPUM_2884        201 AGTGCCTGGCGTTGTAGAAGTTGAACAGGTTTTCTAA    237


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.