Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04770 and BPUM_2885

See Amino acid alignment / Visit BSNT_04770 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_04770___yuxL.1.24716.seq
#    -bsequence dna-align/BPUM_2885.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04770___yuxL-BPUM_2885.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04770___yuxL-BPUM_2885.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04770___yuxL
# 2: BPUM_2885
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2215
# Identity:    1269/2215 (57.3%)
# Similarity:  1269/2215 (57.3%)
# Gaps:         485/2215 (21.9%)
# Score: 3149.5
# 
#
#=======================================

BSNT_04770___      1 ATGAAAAAGCTGATAACCGCAGACGACATCACAGCGATTGTCTCTGTGAC     50
                     |||||.||..||||.||.|||||.||..|.||....|||||.|||||..|
BPUM_2885          1 ATGAAGAAATTGATGACAGCAGAAGATTTAACGAAAATTGTTTCTGTTTC     50

BSNT_04770___     51 AGATCC-------TCAATACGCCCCAGACGGCACCCGTGCCGCATATGTA     93
                     ..||||       |||       |||||.||.|                |
BPUM_2885         51 TCATCCGGTTTATTCA-------CCAGATGGAA----------------A     77

BSNT_04770___     94 AAA--------TCACAA--------GTGAATCAAGAGAAAGATTCGTATA    127
                     |||        |.||||        ||||||.|..|.||.||  ||..||
BPUM_2885         78 AAAGGCGGTTTTTACAAAGGTCACGGTGAATGACAAAAAGGA--CGATTA    125

BSNT_04770___    128 CATCA--AATATATGGATCT----ATGAAACGAAAACGGGCGGGTCTGT-    170
                     ||.||  .||.|||||.| |    |||||..||.|    |.||..|||| 
BPUM_2885        126 CAACATCCATTTATGGGT-TCGAGATGAAGAGACA----GAGGAGCTGTC    170

BSNT_04770___    171 TCCTTGGACACATGGAGAAAAGCGAAGCA-------CCGACCCAAG-ATG    212
                     .|..||||||..||..|  |||..|||||       |||      | .||
BPUM_2885        171 ACAATGGACATTTGAGG--AAGGAAAGCATTATCAGCCG------GTGTG    212

BSNT_04770___    213 GTCTCCGGACGGGTGCAC-GCTTGCCTTTATTTCTGATCGAGAAGGC---    258
                     |||....|||.|..| || |||.||.|||||||    |..|.|||.|   
BPUM_2885        213 GTCAAAAGACAGCAG-ACAGCTCGCGTTTATTT----TGCAAAAGCCAAA    257

BSNT_04770___    259 -GATGCGGCACAGC-TGTATATGAT---GAGCGCTGAAGGCGGAG-AAGC    302
                      ||.||..|.|||| ||.| .||||   |.|||..|.||||||.| |.||
BPUM_2885        258 GGAAGCTCCTCAGCTTGCA-CTGATTCAGTGCGAGGGAGGCGGTGTACGC    306

BSNT_04770___    303 GAGAAAAC--TGACTGATATCCCGTATGGCGTGTCAAAGCCAATATGGTC    350
                           ||  |.||.|..||.||.||.||.||.||..|.||..|.|..||
BPUM_2885        307 ------ACCTTAACGGCGATTCCTTACGGGGTATCTCATCCTGTCTTTTC    350

BSNT_04770___    351 CCCGGATGGCGAATCGATT-------CTG-GTCACTG------------T    380
                     .|..|||||.|..|..|||       ||| |||||||            |
BPUM_2885        351 ACTAGATGGAGCTTTCATTTATGCGGCTGTGTCACTGAAACCATCAGAAT    400

BSNT_04770___    381 CAGTTTGGGAGAGGGAGGAAACATTGATGACCGAGAAAAAA--CAGAGCA    428
                     |.|||                || ||||||     |||.||  .|||||.
BPUM_2885        401 CTGTT----------------CA-TGATGA-----AAAGAAGGAAGAGCG    428

BSNT_04770___    429 GGA-----------CAGC----TATGAACCTG--TTGAAGTGCAAGGCCT    461
                     |||           |.||    |||||   ||  ||||            
BPUM_2885        429 GGATGAGTTCGCTCCTGCGGTATATGA---TGATTTGA------------    463

BSNT_04770___    462 CTCCTACAAACGGGACGGCAAAGGGCTGACGAGAGGTGCG-TATGCCCAG    510
                       ||||.|||...||.||||.| ||||....|||.|.||| |.|.|.|||
BPUM_2885        464 --CCTATAAAGCAGATGGCAGA-GGCTTTTTAGATGGGCGTTTTACGCAG    510

BSNT_04770___    511 CTTGTGCTTGTCAGCGTAAAGTCGGGTGAGAT-GA-------AAGAGCTG    552
                     .||.|.||.||.|..||..|.||.||.||||| ||       |.||||.|
BPUM_2885        511 ATTATTCTAGTAAATGTTCATTCAGGAGAGATCGAGGCAGTTACGAGCGG    560

BSNT_04770___    553 ACAAGTCACAAAGC-TGATCATGGTG-ATCCTGCTTTTTCTCC-TGACGG    599
                     ||         ||| |.||||| ||| |||...|..|.||||| || |||
BPUM_2885        561 AC---------AGCATCATCAT-GTGAATCACACGCTCTCTCCATG-CGG    599

BSNT_04770___    600 CAAATGGCTTG----TTTTCTCAGCTAATTTAA--CTGAAACAGATGATG    643
                     .||||||||||    |.|||      |||..||  ||.||          
BPUM_2885        600 GAAATGGCTTGCCTATATTC------AATCAAATCCTCAA----------    633

BSNT_04770___    644 CCAGCAAGCCGCATGATGTTTACATAATGTCACTGGAGTCTGGAGATC-T    692
                          ||.||         |||||||| ||.||..|.|.|| ..|||| |
BPUM_2885        634 -----AAACC---------TTACATAA-GTGACGTGTGCCT-CCGATCAT    667

BSNT_04770___    693 TA-AGCAGGTTAC--------ACCTCATCGCGGCTCATTCGGATCAAGCT    733
                     || ||.|.|.|||        |..|||      |.||.||  ||||.||.
BPUM_2885        668 TAGAGGACGGTACGACAAAGAAAATCA------CACAATC--ATCAGGCG    709

BSNT_04770___    734 CATTTTC-ACCAGACGGAAGGTATCTTGCTTTGC----------------    766
                     |.|.||| |||         ||||||   |||||                
BPUM_2885        710 CTTATTCTACC---------GTATCT---TTTGCTCCTAATGGAGAGAGC    747

BSNT_04770___    767 ----------TTGGAAATGAAAAGGAATATAAGAATGCTACGCTCTCAAA    806
                               |.|||.||||....||||.|.|.||||||||..||.||  
BPUM_2885        748 CTCGTGTATATCGGACATGAGCGCGAATTTCAAAATGCTACTTTCCCA--    795

BSNT_04770___    807 GGC---GTGGCTCTATGATATCGAACAAGGCCGCCTCACATGTC------    847
                      ||   .|||||.||||||.| |||..|||      .|.|||||      
BPUM_2885        796 -GCATTATGGCTGTATGATCT-GAAGGAGG------GAAATGTCGTTCAG    837

BSNT_04770___    848 -TTACTGAGATGCTGGACGTTCATTTAGCGGATGCG-----CTGATT---    888
                      |..|.||.|||||.||..|         |.|||.|     |||..|   
BPUM_2885        838 TTGTCAGAAATGCTCGATAT---------GTATGTGGGCAACTGTATGGC    878

BSNT_04770___    889 -GGAGATTCATTGATCGGTGGTGCTGAACAGCGCCCGATTTGGACAAAGG    937
                      ||.|||...||.||.||.|..||..|.||||..|||...||||||||||
BPUM_2885        879 AGGGGATAGCTTTATGGGAGAAGCCAATCAGCTTCCGCAGTGGACAAAGG    928

BSNT_04770___    938 ACAGCCAAGGGTTTTATGTCATCGGCACAGATCAAGGCAGTACGGGCATC    987
                     |.|||||.||||||||||...|.|...|.||||||||||||||.||.||.
BPUM_2885        929 ATAGCCAGGGGTTTTATGCGCTTGTTTCCGATCAAGGCAGTACAGGGATT    978

BSNT_04770___    988 TATTATATTTCGATTGAAGGCCTTGTGTATCCGATTCGTCTGGAAAAAGA   1037
                     ||||||.|.||..||||||||.|.|..|||||..||||..|.||...|||
BPUM_2885        979 TATTATTTCTCCGTTGAAGGCTTAGCCTATCCTGTTCGATTAGAGGCAGA   1028

BSNT_04770___   1038 GTACATCAATAGCTTTTC-TCTTTCA-CCTGATGAA--CAGCACTTTATT   1083
                     ..|.||||..|.|  ||| .|.|||| ||.||||||  ||      .|.|
BPUM_2885       1029 ACATATCACAAAC--TTCAGCCTTCATCCAGATGAATCCA------AAAT   1070

BSNT_04770___   1084 GCCAGTG-TGACAAAGCCGG-----ACAGACCG--------AGTGAGCT-   1118
                     ||   || ||    ||||||     ||   |||        |||||||| 
BPUM_2885       1071 GC---TGCTG----AGCCGGCTGTCAC---CCGTTTCTCCAAGTGAGCTG   1110

BSNT_04770___   1119 -------TTACAGTATCCCGCTTGGACAGGAAGA---GAAACAGCTGACT   1158
                            |.|||.||        ||..|||.|||   .||.||..|.||.
BPUM_2885       1111 TGTGAGATGACATTA--------GGGGAGGCAGATCTAAAGCAAATCACA   1152

BSNT_04770___   1159 GGCGCGAATGACAAGTTTGTCAGGGAGCATACGATATCAATACCTGAAGA   1208
                     ..||.|.||||..|.||..|||.|||||||....||||..||||   |||
BPUM_2885       1153 TTCGAGCATGATGAATTCCTCAAGGAGCATGTCCTATCGGTACC---AGA   1199

BSNT_04770___   1209 ---------GATTCAATATGCTACAGAAGACGGCGT-GATGGTGAACGGC   1248
                              |.||||.|      ||.||||.||.|| || ||||.|.|||
BPUM_2885       1200 GCCATTTTCGTTTCAGT------CAAAAGAAGGTGTCGA-GGTGCATGGC   1242

BSNT_04770___   1249 TGGCTGATGAGGCCTGCACAAATGGAAGGTGAGACAACATATCCACTTAT   1298
                     |||.|.||||.||||.|..|.|||||||..|.||..||.|||||.|||||
BPUM_2885       1243 TGGTTTATGAAGCCTTCCGAGATGGAAGAGGGGAAGACTTATCCGCTTAT   1292

BSNT_04770___   1299 TCTTA-ACATACACGGCGGTCCGCATATGATGTACGGACATACATATTTT   1347
                     | ||| |.||.||.|||||.||||||...|||||.||..|||||||||||
BPUM_2885       1293 T-TTAGAAATTCATGGCGGACCGCATGCCATGTATGGTTATACATATTTT   1341

BSNT_04770___   1348 CATGAGTTTCAGGTGCTGGCGGCGAAAGGATACGCGGTCGTTTATATCAA   1397
                     |||||.|||||..||||.||.||..||||.||.||..||||.||||||||
BPUM_2885       1342 CATGAATTTCAAATGCTCGCTGCTGAAGGCTATGCCATCGTGTATATCAA   1391

BSNT_04770___   1398 TCCGAGAGGAAGCCACGGCTACGGGCAGGAATTTGT---GA--ATGCGGT   1442
                     |||....||.||.||.||.||.||.||  |||.|.|   ||  ||   ||
BPUM_2885       1392 TCCTCATGGCAGTCATGGATATGGACA--AATGTTTACCGACCAT---GT   1436

BSNT_04770___   1443 CAGAGGAGA-TTATGGGGGAAAGGATTATGACGATGTGATGCAGGCTGTG   1491
                     .||||| || .|||||.||....||||||||.|||||.|||||||||||.
BPUM_2885       1437 GAGAGG-GAGCTATGGTGGCGTTGATTATGAGGATGTCATGCAGGCTGTT   1485

BSNT_04770___   1492 GAT----------GAGGCTATCAAACGAGATCCGCATATTGATCCTAAGC   1531
                     |||          .||.||||     ||..|||     |||||  .||.|
BPUM_2885       1486 GATCATGTGCTGAAAGCCTAT-----GATTTCC-----TTGAT--GAAAC   1523

BSNT_04770___   1532 --GGCTCGGTGTCACGGGCGGAAGCTACGGAGGTTTTATGACCAACTGGA   1579
                       |.||.||.||.||.|||||.|||||.||.|||||||||||||||||||
BPUM_2885       1524 AAGACTTGGGGTGACAGGCGGCAGCTATGGCGGTTTTATGACCAACTGGA   1573

BSNT_04770___   1580 TCGTCGGGCAGACGAACCGCTTTAAAGCTGCCGTTACCCAGCGCTCGATA   1629
                     |.|||||.|||||..||||.|||...||.|||||.||.|||||.||.||.
BPUM_2885       1574 TTGTCGGACAGACTGACCGTTTTCGCGCAGCCGTCACACAGCGGTCCATT   1623

BSNT_04770___   1630 TCAAATTGGATCAGCTTTCACGGCGTCAGTGATATCGGCTATTTCTTTAC   1679
                     |||||.|||||.||||||.|.|||.|||||||||||||.||||.||||||
BPUM_2885       1624 TCAAACTGGATTAGCTTTTATGGCATCAGTGATATCGGTTATTACTTTAC   1673

BSNT_04770___   1680 AGACTGGCAGCTTGA--GC-ATGAC-ATGTTTGAGGACACAGAAAAGCTC   1725
                     |...||||||.|.||  || ||..| |||.||.||    |.||.|||||.
BPUM_2885       1674 AAGGTGGCAGATCGAAGGCGATATCTATGATTCAG----CCGATAAGCTA   1719

BSNT_04770___   1726 TGGGACCGGTCTCCTTTAAAATACGCAGCAAAC--GTGGAGACACCGCTT   1773
                     |||||.||.||.||..||||.||.|  ..||||  ||..|.||.||||||
BPUM_2885       1720 TGGGATCGTTCACCGCTAAAGTATG--TGAAACAAGTAAATACGCCGCTT   1767

BSNT_04770___   1774 TTGATACTGCA---TGGCGAGCGGGATGACCGATGTCCGATCGAGCAGGC   1820
                     .|.||.|||||   ||.|||   .||..|.||.||.||..||||.||.||
BPUM_2885       1768 CTTATCCTGCACAGTGACGA---AGACTATCGCTGCCCAGTCGATCAAGC   1814

BSNT_04770___   1821 GGAGCAGCTGTTTATCGCTCTGAAAAAAATGGGCAAGGAAACCAAGCTTG   1870
                     .||.|||||.|||.|.||.|||||..|..|.||.||.||.||.|.|||.|
BPUM_2885       1815 AGAACAGCTATTTGTAGCACTGAAGGAGCTTGGGAAAGACACAAGGCTCG   1864

BSNT_04770___   1871 TCCGTTTTCCGAATGCATCGCACAATTTGTCACGCACCGGACACCCAAGA   1920
                     ||...||.|||||.|||||.||..||||.||..|.|..||.||.|||.|.
BPUM_2885       1865 TCAAATTCCCGAAGGCATCTCATGATTTATCGAGAAGTGGCCATCCAGGG   1914

BSNT_04770___   1921 CAGCGGA-TCAAGCGCCTGAATTATATCA--GCTCATGGTTT---GACCA   1964
                     |||||.| |||| .|.||||..|.|||||  |.|  ||||||   ||..|
BPUM_2885       1915 CAGCGTATTCAA-AGACTGACCTTTATCAAGGAT--TGGTTTAGAGAGAA   1961

BSNT_04770___   1965 ATATCTCTAA-----   1974
                     .|     |||     
BPUM_2885       1962 GT-----TAAAATAA   1971


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