Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_04771 and BPUM_2886

See Amino acid alignment / Visit BSNT_04771 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_04771___thrB.1.24716.seq
#    -bsequence dna-align/BPUM_2886___thrB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04771___thrB-BPUM_2886___thrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04771___thrB-BPUM_2886___thrB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04771___thrB
# 2: BPUM_2886___thrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 971
# Identity:     661/971 (68.1%)
# Similarity:   661/971 (68.1%)
# Gaps:          79/971 ( 8.1%)
# Score: 2113.5
# 
#
#=======================================

BSNT_04771___      1 ATGAACGAAGCCGACATGCTGTTCTCTGTCACTGTTCCCGGAAGCACAGC     50
                     ||||...|||||..||||||.||.||..||||.||.||.||||||||.||
BPUM_2886___t      1 ATGAGTAAAGCCTCCATGCTTTTTTCAATCACAGTACCGGGAAGCACTGC     50

BSNT_04771___     51 TAACCTAGGCCCCGGCTTTGATTCAGTCGGAATGGCGCTCAGCAGATATT    100
                     .||..||||.||.||||||||||||||.|||||||||||||||.|.||||
BPUM_2886___t     51 CAATTTAGGACCAGGCTTTGATTCAGTTGGAATGGCGCTCAGCCGTTATT    100

BSNT_04771___    101 TGAAGCTGACCGTCTTTGAAAGCGACAAATGGTCT-TTTGAGGCTGAAAC    149
                     |.|||||..|.||||||||....||.|..||| || |||||.||.|||.|
BPUM_2886___t    101 TAAAGCTATCGGTCTTTGACCATGATAGTTGG-CTGTTTGAAGCAGAATC    149

BSNT_04771___    150 AGAAACAGTCG---CCGGAATTCCGGCGGGTACAGATAACCTGATCTATC    196
                     |||   .||||   |.||.|||||..|.||.||.||.|||||.||.||||
BPUM_2886___t    150 AGA---TGTCGTGTCTGGGATTCCACCCGGCACCGACAACCTCATTTATC    196

BSNT_04771___    197 AAGTGGCTAAACGGACCGCAGA----TTTGTACGGAAAAGAAATGCCTCC    242
                     ||...||.|||..|..||||||    |||    ||||||..|.|.||.||
BPUM_2886___t    197 AAACAGCCAAAAAGGTCGCAGATCACTTT----GGAAAAACACTCCCGCC    242

BSNT_04771___    243 TGTCCATGTGAAGGTGTGGAGCGACATCCCGCTTGCACGCGGCCTTGGCA    292
                     |||..||||.||.||||||||.||.||.||..|.|||||.||.||.||||
BPUM_2886___t    243 TGTTTATGTCAAAGTGTGGAGTGATATTCCATTGGCACGGGGGCTGGGCA    292

BSNT_04771___    293 GCAGCGCCGCGGCGATTGTAGCGGCCATTGAACTGGCTGATGAA-----T    337
                     ||||.||.||.||.|||||.||.||||||||.||.||    .||     |
BPUM_2886___t    293 GCAGTGCTGCTGCCATTGTGGCAGCCATTGAGCTAGC----CAACCAGCT    338

BSNT_04771___    338 TATGCGGCTTAAAGCTGTCTGAAGCGGACAAGCTGCATTTAGCCAGTCTA    387
                     |.| ||..|||||..||.|.||.|...|.|||||...|||.||.|||...
BPUM_2886___t    339 TCT-CGAATTAAATATGACAGATGATCAAAAGCTCTTTTTTGCAAGTGAG    387

BSNT_04771___    388 GAAGAAGGACACCCGGACAATGCTGGCGCTTCTCTCGTCGGCGGACTTGT    437
                     |.||||||.||.||.||.|||||.||.||||||.|..|.|||||..|..|
BPUM_2886___t    388 GTAGAAGGTCATCCAGATAATGCGGGTGCTTCTTTATTTGGCGGTTTACT    437

BSNT_04771___    438 GATCGGCCTGCATGAGGATGACGAGACCCAAATGATCCG----CGTCCCG    483
                     |||.||.||.|||||.||.|||.|||  ||.|||  |||    .||   |
BPUM_2886___t    438 GATTGGTCTTCATGAAGAAGACAAGA--CACATG--CCGTCAAAGT---G    480

BSNT_04771___    484 A---ATGCTGACATTGACGTAGTCGTTGTCATTCCTTTTTACGAAGTGCT    530
                     |   |||..||.||.||.||.||.||.||.|||||||||||.||||||||
BPUM_2886___t    481 AAACATGTGGATATAGATGTTGTTGTCGTGATTCCTTTTTATGAAGTGCT    530

BSNT_04771___    531 GACAAGAGACGCGAGAGACGTGCTTCCGAAGGAGTTTCCATATGCCGATG    580
                     |||||..||.||..|.||.||.||.|||.||||.|||.|.|||....|||
BPUM_2886___t    531 GACAAAGGATGCCCGTGATGTCCTGCCGGAGGATTTTTCCTATAAACATG    580

BSNT_04771___    581 CCGTAAAAGCAAGTGCTGTCAGCAATATTCTCATTGCTGCGATCATGTC-    629
                     |.||.|..||.||||||||.||||||.|.||..||||.||..|.|||.| 
BPUM_2886___t    581 CTGTTAGTGCGAGTGCTGTGAGCAATGTGCTTGTTGCCGCCTTAATGACG    630

BSNT_04771___    630 CAAGGATTGGCCGCTCGTCGGGAAAATCATGAAGAAGGATATGTTCCATC    679
                     ||| .|.||||||||.||.||..||||.|||||.||||||.|.||.||||
BPUM_2886___t    631 CAA-AACTGGCCGCTTGTTGGAGAAATGATGAATAAGGATTTATTTCATC    679

BSNT_04771___    680 AGCCGTACCGGGCGATGCTTGTGCCTGAGCTGTCAAAAGTAGAGCACGTC    729
                     ||||.||.||..|.|||||.||.||.||||||||.||.||||||||.|||
BPUM_2886___t    680 AGCCTTATCGTACAATGCTCGTTCCAGAGCTGTCGAAGGTAGAGCATGTC    729

BSNT_04771___    730 GCCGAGATGAAGGGCGCATATGGAACGGCTCTCAGCGGAGCAGGCCCGAC    779
                     ||...|.|.||.||.||.|||||||||||..|.|||||.||.||.|||||
BPUM_2886___t    730 GCTTCGCTAAAAGGAGCGTATGGAACGGCATTAAGCGGTGCTGGTCCGAC    779

BSNT_04771___    780 GATTCTCGTCATGACC------GAAAAAGGAAAGGGAGAAGAGCTAAAAG    823
                     .|      ||.|.|||      ||||||||.||||||||||.|||.|||.
BPUM_2886___t    780 AA------TCTTAACCTTAATTGAAAAAGGGAAGGGAGAAGGGCTGAAAA    823

BSNT_04771___    824 AACAGCTCGCGCTTCATTTCCCTCATTGTGAAGTAGACGCT-TTGACCGT    872
                     |.|||||.||.|...|.|||||.|||||.|||||||| .|| |||||.||
BPUM_2886___t    824 AGCAGCTTGCCCAAAACTTCCCACATTGCGAAGTAGA-TCTGTTGACGGT    872

BSNT_04771___    873 TCCGAAAGAGGGAAGTATAA----------TAGAGCGAAATCCTTTATAT    912
                     .||          ||||.||          |.||||...|||||.|..||
BPUM_2886___t    873 ACC----------AGTAGAAGGTGTTGTCGTGGAGCATGATCCTGTCAAT    912

BSNT_04771___    913 CAAGTAA--AAAGTG-TATAG    930
                     |||||||  ||.||| ||||.
BPUM_2886___t    913 CAAGTAAAGAACGTGCTATAA    933


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04771 and BPUM_2886

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
