Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04773 and BPUM_2887
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:32
# Commandline: needle
# -asequence dna-align/BSNT_04773___thrC.1.24716.seq
# -bsequence dna-align/BPUM_2887___thrC1.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04773___thrC-BPUM_2887___thrC1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04773___thrC-BPUM_2887___thrC1.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04773___thrC
# 2: BPUM_2887___thrC1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1084
# Identity: 838/1084 (77.3%)
# Similarity: 838/1084 (77.3%)
# Gaps: 38/1084 ( 3.5%)
# Score: 3220.0
#
#
#=======================================
BSNT_04773___ 1 TTGGAGCTAAT---GTGGAAAGGACTTATCCATCAATATAAAGAATTTTT 47
|| ||||||.||||||||..|..|||.|.|||||||.||
BPUM_2887___t 1 ---------ATGAAGTGGAATGGACTTATTGAAGAATTTCAAGAATTCTT 41
BSNT_04773___ 48 ACCTGT-AACAGATCAAACACCGGCGCTAACTTTACATGAAGGAAACACA 96
|||.|| |||..||| ||||||....|||||.|||.|||||||.||.|||
BPUM_2887___t 42 ACCAGTAAACGAATC-AACACCAAAACTAACATTAAATGAAGGGAATACA 90
BSNT_04773___ 97 CCTCTTATTCACCTGCCGAAGCTGTCTGAGCAGCTCGGAATTGAGCTTCA 146
||.||.||.|||||..|.|||||.||.||..||||.||.|||||||||||
BPUM_2887___t 91 CCGCTGATCCACCTCTCCAAGCTTTCGGAAAAGCTAGGGATTGAGCTTCA 140
BSNT_04773___ 147 TGTCAAAACGGAAGGCGTCAATCCTACGGGATCATTTAAAGATCGCGGAA 196
|||.|||||.||||||||||||||.||.||.||.|||||.||||||||.|
BPUM_2887___t 141 TGTGAAAACAGAAGGCGTCAATCCAACAGGCTCTTTTAAGGATCGCGGGA 190
BSNT_04773___ 197 TGGTTATGGCTGTGGCAAAGGCAAAAGAAGAAGGCAATGACACGATTATG 246
||||.||||||||.|||||||||||||||||.||||||||.|||.|.|||
BPUM_2887___t 191 TGGTCATGGCTGTTGCAAAGGCAAAAGAAGAGGGCAATGATACGGTCATG 240
BSNT_04773___ 247 TGCGCGTCAACAGGTAACACTTCCGCTGCTGCGGCAGCATATGCAGCCCG 296
||.||.||.|||||.||.|||||.||.||.||.||.||.|||||||||||
BPUM_2887___t 241 TGTGCTTCGACAGGGAATACTTCTGCAGCGGCAGCCGCTTATGCAGCCCG 290
BSNT_04773___ 297 TGCTAACATGAAATGCATTGTCATCATCCCGAACGGAAAAATTGCATTTG 346
||||.|.||||||||.||.||||||||.||..|||||||||||||.||.|
BPUM_2887___t 291 TGCTGATATGAAATGTATCGTCATCATTCCAGACGGAAAAATTGCCTTCG 340
BSNT_04773___ 347 GAAAACTCGCTCAAGCTGTCATGTACGGAGCCGAGATTATCGCAATTGAC 396
|.||.|||||.||.||.||.|||||.|||||.|||||.||.||.||||||
BPUM_2887___t 341 GTAAGCTCGCGCAGGCGGTGATGTATGGAGCAGAGATCATTGCGATTGAC 390
BSNT_04773___ 397 GGAAACTTTGACGATGCGCTTAAAATTGTCCGTTC----CATCTGTGAGA 442
|||||||||||.|||||.||.||||| ||||| |||||||||.|
BPUM_2887___t 391 GGAAACTTTGATGATGCACTGAAAAT----CGTTCGCAGCATCTGTGAAA 436
BSNT_04773___ 443 AATCACCGATTGCCCTTGTCAACTCAGTCAACCCTTACCGCATTGAAGGC 492
||||.||||||||||||||.|||||.|||||.||.|||||.||||||||.
BPUM_2887___t 437 AATCGCCGATTGCCCTTGTGAACTCTGTCAATCCATACCGAATTGAAGGA 486
BSNT_04773___ 493 CAAAAAACTGCTGCCTTCGAAGTGTGCGAACAGCTGGGGGAAGCGCCTGA 542
|||||.||.||.||.||.|||.|.||.||.|||||.||....||.|||||
BPUM_2887___t 487 CAAAAGACGGCGGCATTTGAAATCTGTGAGCAGCTAGGCTCGGCTCCTGA 536
BSNT_04773___ 543 TGTTTTAGCGATCTCGGTCGGAAATGCTGGAAACATCACTGCGTACTGGA 592
.||..|.|||||..|.||.||||||||.||.||.||||||||.|||||||
BPUM_2887___t 537 CGTACTGGCGATTCCTGTTGGAAATGCAGGGAATATCACTGCCTACTGGA 586
BSNT_04773___ 593 AGGGCTTCAAGGAATATCATGAGAAAAACGGCACAGGCCTTCCGAAAATG 642
|.||||||||||||||||||||||||||.||.||.||.||.||....|||
BPUM_2887___t 587 AAGGCTTCAAGGAATATCATGAGAAAAAAGGAACGGGACTGCCTGTTATG 636
BSNT_04773___ 643 CGCGGCTTTGAAGCTGAGGGTGCGGCGGCAATCGTGCGCAATGAAGTGAT 692
||||||||||||||.||.||.||.||.||.|||||.||.||.||||||||
BPUM_2887___t 637 CGCGGCTTTGAAGCAGAAGGCGCAGCAGCGATCGTACGAAACGAAGTGAT 686
BSNT_04773___ 693 TGAAAATCCGGAAACAATAGCGACAGCCATTCGTATCGGAAACCCGGCAA 742
||||.|.||.||||||.|.||.||.|||||.|||||||||||.||.||||
BPUM_2887___t 687 TGAACAGCCAGAAACAGTGGCAACTGCCATCCGTATCGGAAATCCTGCAA 736
BSNT_04773___ 743 GCTGGGACAAAGCTGTAAAGGCA---GCCGAGGAATCCAATGGGAAAATT 789
|||||.|..||||||| |||| ||.||.|||||.||.||.||.|||
BPUM_2887___t 737 GCTGGAAACAAGCTGT---GGCAGCGGCAGATGAATCAAACGGAAAGATT 783
BSNT_04773___ 790 GACGAAGTCACTGATGATGAAATCCTTCACGCATATCAGCTGATCGCCCG 839
||.|||||.||.||.||.|||||.|||||.||||||||..||||.||.||
BPUM_2887___t 784 GATGAAGTGACAGACGAAGAAATTCTTCATGCATATCAATTGATTGCTCG 833
BSNT_04773___ 840 TGTAGAAGGCGTGTTTGCAGAACCGGGTTCTTGCGCGTCTATCGCAGGAG 889
||.||||||||||||||||||.||.||.||.||.||||||||||||||.|
BPUM_2887___t 834 TGAAGAAGGCGTGTTTGCAGAGCCAGGCTCATGTGCGTCTATCGCAGGTG 883
BSNT_04773___ 890 TGCTGAAACAGGTGAAATCCGGAGAAATTCCGAAAGGCAGCAAGGTCGTA 939
|.||.||.||.||||||||||||||.||...|..||||||.||.||.||.
BPUM_2887___t 884 TTCTAAAGCAAGTGAAATCCGGAGAGATCAAGCGAGGCAGTAAAGTTGTG 933
BSNT_04773___ 940 GCTGTGTTAACAGGAAACGGACTGAAAGATCCGAACACAGCGGTCGACAT 989
||.||.||||||||.||.|||.||||||||||.||.|||||..|.||.||
BPUM_2887___t 934 GCGGTATTAACAGGCAATGGATTGAAAGATCCAAATACAGCCATTGATAT 983
BSNT_04773___ 990 TTCAGAAATCAAGCCTGTCACATTGCCGA--CTGATGAAGA-CAGCATCC 1036
||||.|||||||.||.||.|||.| ||| |.|||||||| || .||.|
BPUM_2887___t 984 TTCACAAATCAAACCGGTTACACT--CGATGCAGATGAAGATCA-AATTC 1030
BSNT_04773___ 1037 TTGAATA--TGTAAAAGGAGCGGCCCGTGTATGA 1068
|||||.| ||.||||| ||.||.||.||||||
BPUM_2887___t 1031 TTGAACACTTGGAAAAG--GCTGCGCGCGTATGA 1062
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