Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04780 and BPUM_2893

See Amino acid alignment / Visit BSNT_04780 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_04780___yutE.1.24716.seq
#    -bsequence dna-align/BPUM_2893.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04780___yutE-BPUM_2893.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04780___yutE-BPUM_2893.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04780___yutE
# 2: BPUM_2893
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 475
# Identity:     303/475 (63.8%)
# Similarity:   303/475 (63.8%)
# Gaps:          80/475 (16.8%)
# Score: 926.5
# 
#
#=======================================

BSNT_04780___      1 ATGTATTTTGTTGACAGAAGCAAAATCGAGAAAACACTAGGGTTCTTCGA     50
                     ||||||||.||.|||||||..|||||.||..|.|||.||.|.||.|||||
BPUM_2893          1 ATGTATTTCGTAGACAGAAAAAAAATTGAAGAGACATTACGTTTTTTCGA     50

BSNT_04780___     51 GCACCAGCTGGCGCTAT---TTGACTCA-------CAAACAGACTGG--C     88
                     |.|       ||..|||   ||||..||       ||||||   |||  .
BPUM_2893         51 GGA-------GCAATATGAGTTGATGCAGAGCCATCAAACA---TGGACA     90

BSNT_04780___     89 AGTCTGAAATCGGGGAATTGGCACTTCAGCGTATAGGCCATCTGTTAATC    138
                     ||||  .|.|.|.|.||...||.||..|.||.||.|..|||.||.|..||
BPUM_2893         91 AGTC--CACTAGAGAAAAAAGCGCTGGAACGAATTGTTCATTTGCTCGTC    138

BSNT_04780___    139 GAATGCATTTTGGATACAGGCAATGACATGATTGACGGCTTTATTATGCG    188
                     |||||.|||.|.|||||.||.||||||||||||||.||||||||||||||
BPUM_2893        139 GAATGTATTCTTGATACGGGAAATGACATGATTGATGGCTTTATTATGCG    188

BSNT_04780___    189 GGACCCGGGAAGCTATGACGACATTATGGATATACTTGTTGATGAGAAAG    238
                     .||.||.|||||||||||.|||||.||||||||.|||||.|||||.||.|
BPUM_2893        189 TGATCCAGGAAGCTATGATGACATCATGGATATTCTTGTCGATGAAAAGG    238

BSNT_04780___    239 TTGTCACGGAAAAAGAGGGTGATGAGCTCAAGAAA--TTGATCGCCTACC    286
                     ||||..|.|||.|.||.||...|.||||.|| |||  ||| ||.|.|.||
BPUM_2893        239 TTGTACCCGAAGAGGAAGGCAGTCAGCTGAA-AAAGCTTG-TCTCGTGCC    286

BSNT_04780___    287 GCAAAAC----GT-----------------TGGTTCAACAGTATCTGCTC    315
                     |||||||    ||                 |||||||.||..|..|||| 
BPUM_2893        287 GCAAAACACTTGTGCAGCAATACCAAGAAGTGGTTCATCACGACTTGCT-    335

BSNT_04780___    316 GC---TGA-CAGCGGCGAGCTTTACAGGCTGATCAAGGCGCATCAAACAG    361
                     ||   ||| |||||           |||.|||       ||||      |
BPUM_2893        336 GCAGGTGATCAGCG-----------AGGTTGA-------GCAT------G    361

BSNT_04780___    362 CTCTTCAAGACTTCCCGAAACGGATCAGAAGCTATTTGGAAACA-GAGCT    410
                     |.||.||.|..|||||.||.||.|||.|.|.|||.||.| |.|| |||||
BPUM_2893        362 CGCTACAGGTTTTCCCAAACCGCATCCGTACCTACTTAG-AGCAGGAGCT    410

BSNT_04780___    411 AGGACCTGTTTCCGCGTTTAAATAA    435
                     .||.||.||.||.||||||||||||
BPUM_2893        411 TGGCCCAGTATCAGCGTTTAAATAA    435


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