Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04784 and BPUM_2897
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:33
# Commandline: needle
# -asequence dna-align/BSNT_04784___yunA.1.24716.seq
# -bsequence dna-align/BPUM_2897.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04784___yunA-BPUM_2897.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04784___yunA-BPUM_2897.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04784___yunA
# 2: BPUM_2897
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1061
# Identity: 701/1061 (66.1%)
# Similarity: 701/1061 (66.1%)
# Gaps: 160/1061 (15.1%)
# Score: 2245.0
#
#
#=======================================
BSNT_04784___ 1 GTGAAAGTTTTGTTATC---------CGCTCTTCTTC------TCCTTT- 34
||||||||..|.|||.| |||||| ||| ||||||
BPUM_2897 1 GTGAAAGTGGTTTTAGCCATCATAATCGCTCT--TTCAATGCTTCCTTTA 48
BSNT_04784___ 35 --TGTT--TGCATTTGAGCCTTCTGTGTCTGGAAA--AAAACTTTCAGAT 78
|||| ||||...| ||.|| .||.|....||||
BPUM_2897 49 CCTGTTCATGCACAAG--------------GGGAAGGCAAGCAGCAAGAT 84
BSNT_04784___ 79 CCAGTGCTGTCGAAA----CGGATGGAATTATATCATAAAATCGAAGCTG 124
||.|| ||| ||.||||.|.||||..|.|||.|| ||..
BPUM_2897 85 ---GTACT----AAAGCAGCGAATGGCACTATACGAAAAAGTC---GCCA 124
BSNT_04784___ 125 T---GACGCAGATCCCTTGGTATGCGCTCGCCGCTGTTGATCAATACGA- 170
| |||.||..|.||.|||||||..||.||.||.||||||||.||.||
BPUM_2897 125 TCACGACACAAGTTCCATGGTATGTACTTGCTGCGGTTGATCAGTATGAG 174
BSNT_04784___ 171 ---------AGAAAACGTGCGGAGCA-------ACCGGAAAGATCTGCCT 204
.|||||.|| ||.| ||| ||||.|
BPUM_2897 175 CACAATATTCGAAAAAGT----AGAAGAGATTTACC-GAAACA------- 212
BSNT_04784___ 205 GAAAAGGCGGGAATCATCAGCATCTATATACCCGATGATATCTGGAGCGG 254
|||||||| ||||..|||||||.||.|||...||.||.||||.|||
BPUM_2897 213 -AAAAGGCG----TCATTGGCATCTACATTCCCCGGGAAATGTGGATCGG 257
BSNT_04784___ 255 GCCTGAAAACCCGAATCCGAAAG-ACGAT---GCGCCGTTAAGCATTAAA 300
.||||||||||||||| ||| |.||| .|.||.||||||||||||
BPUM_2897 258 TCCTGAAAACCCGAAT----AAGCAGGATACCTCTCCTTTAAGCATTAAA 303
BSNT_04784___ 301 GTGTTTGACGGAATCGGAATGGATGGCGATGGAGACGGGAAAGCCGAGGT 350
||||||||.|||||.|||.|.|||||..|.||.||.||.|||||
BPUM_2897 304 GTGTTTGATGGAATTGGACTTGATGGAAACGGGGATGGAAAAGC------ 347
BSNT_04784___ 351 CAGCA------ACGATGAAGATATCTTGTATACGTTCAGC-CAATACTTA 393
.|||| |||||||.|||.|.||.|..||||| .|| ||||||||.
BPUM_2897 348 AAGCAGCGATGACGATGAGGATGTATTATTCACGTT-TGCTCAATACTTG 396
BSNT_04784___ 394 CTGTC-GTATGGCACAGATGAAGACAACATCCGGATC---------GGGC 433
|| || .||.|||| |||.||| .|||| ..||
BPUM_2897 397 CT-TCATTACGGCA---------ACAGCAT--TGATCAATTAAAAATTGC 434
BSNT_04784___ 434 TT--TGGAATTATTACCGGCGTGATCAGACAGTGGGGATTAT---ATCTG 478
|| |||.|.|||||..|.||.|||||.||.||.||.||.|| ||||
BPUM_2897 435 TTTATGGGACTATTATGGACGAGATCAAACCGTTGGAATCATTTCATCT- 483
BSNT_04784___ 479 AATTCATGAAGCTGTTTAAAGC-CTACGGCCATATTGATCTGGGCGAGCA 527
||.||||||||.|.| .||| |||.||.|||.||||.||.||..||||
BPUM_2897 484 --TTTATGAAGCTATAT-CAGCACTATGGTCATCTTGACCTCGGAAAGCA 530
BSNT_04784___ 528 TGCATTCCCGCTTCCGATCAGAACCGATTACAGCTACCGAAGCACGTGGG 577
.||.|||||.|||||..|..||.|.||.||||||||||||||.||.||||
BPUM_2897 531 CGCTTTCCCTCTTCCTGTTGGAGCTGACTACAGCTACCGAAGTACATGGG 580
BSNT_04784___ 578 GAGATGCCCGCGGCTTCGGTGGAAGGCGGATTCATGAAGGTACGGATATC 627
|||||||..|.||.||.||.||.|||.|.||||||||.|||||.|||.|.
BPUM_2897 581 GAGATGCAAGAGGATTTGGAGGCAGGAGAATTCATGAGGGTACAGATTTA 630
BSNT_04784___ 628 TTTGCCCATTACGGCCTTCCTGTCAAAT----CCACATGTTACGGCGTAG 673
|||||||||||.||.|||||.|| | |.||||..||.||.||..
BPUM_2897 631 TTTGCCCATTATGGACTTCCCGT----TCGTGCGACATCGTATGGTGTGA 676
BSNT_04784___ 674 TTGAAATGAAGGGCTGGAACCGCTTCGGAGGATGGAGAATCGGCATCAGG 723
||||||||||.||||||||||||||.||.||.|||.|.||.||.||..|.
BPUM_2897 677 TTGAAATGAAAGGCTGGAACCGCTTTGGCGGCTGGCGGATTGGTATTCGA 726
BSNT_04784___ 724 GACAT---TAACAATACGTATCATTATTTTGCCCATCTCAATGGGTTTGC 770
||.|| ||||.|| ||||||||.||.||.|||.|.|||||.|||||
BPUM_2897 727 GATATTCATAACCAT---TATCATTACTTCGCTCATTTAAATGGCTTTGC 773
BSNT_04784___ 771 CAAAGGGATTAAAACAGGACAAATCGTTGAGCCTGGCCAAGTGATCGGAT 820
.|||||..|.||||||||.|||||.|||||.|||||.||.||.||.||||
BPUM_2897 774 AAAAGGACTCAAAACAGGTCAAATTGTTGAACCTGGACAGGTCATTGGAT 823
BSNT_04784___ 821 CAGTCGGCAGCTCCGGATACGGCCCGCCGGGAACCGCCGGGAAGTTCCCG 870
|.|||||.||||||||.||.|||||.||.||.||.||.||.||.||.|||
BPUM_2897 824 CTGTCGGTAGCTCCGGTTATGGCCCCCCAGGCACAGCAGGAAAATTTCCG 873
BSNT_04784___ 871 CCGCATCTGCACTATGGCATGTACAAAGATAACGGAAGAACCGAATGGTC 920
||||||||.||||||||.|||||.|||||.|||||.|||||.||||||||
BPUM_2897 874 CCGCATCTTCACTATGGGATGTATAAAGACAACGGCAGAACTGAATGGTC 923
BSNT_04784___ 921 ATTTGATCCATACCCGCATTTGAGGGCGTGGGAGCGATATGAATACCAAA 970
.||||||||.|||||.|||||.|||||.||||||.||..|| |.|..|
BPUM_2897 924 TTTTGATCCGTACCCTCATTTAAGGGCATGGGAGAGAGCTG---AGCGGA 970
BSNT_04784___ 971 AAAAGAAGTAA 981
||..|.|.|||
BPUM_2897 971 AACGGCATTAA 981
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