Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01398 and BPUM_2905
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:59
# Commandline: needle
# -asequence dna-align/BSNT_01398.1.24716.seq
# -bsequence dna-align/BPUM_2905.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01398-BPUM_2905.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01398-BPUM_2905.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01398
# 2: BPUM_2905
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1433
# Identity: 562/1433 (39.2%)
# Similarity: 562/1433 (39.2%)
# Gaps: 733/1433 (51.2%)
# Score: 944.5
#
#
#=======================================
BSNT_01398 1 ATGTCTGAAGCATTAACAGAGCAGAAAGGCCAAAAGTGGGC-GATCAGCC 49
|..||| |||.||||| |||.| ..
BPUM_2905 1 ----------------------ATGAAG----AAAATGGGCAGATTA-TA 23
BSNT_01398 50 TGTTT--ACGATTGGTGTATTTATGGC--TGC---GCTAGATAACGGAAT 92
|.||| |.|.|...|.|.|||||.|| ||| ||| ..||..|
BPUM_2905 24 TATTTTAATGCTCAATATTTTTATTGCCATGCTTGGCT-----TTGGCCT 68
BSNT_01398 93 TATT-------TCAGCTGCC---TTA----------------ACAAC--G 114
|||| ||| |||| ||| .|||| |
BPUM_2905 69 TATTGTCCCTGTCA--TGCCAAGTTACATTGAAGCTTTTGGCGCAACAGG 116
BSNT_01398 115 ATAAACGAGTCGTTTGCCGTTTCTCCTTCCTGGGGATCATGGGGCATTAC 164
|.|||| |.|||.| |||||..|..||| ||...||..||||
BPUM_2905 117 AAAAAC-ACTCGGT-----TTTCTTGTCGCTG-----CAACAGGTCTTAC 155
BSNT_01398 165 -------CCTTTAT-ACGCTCGGTCTTA-GCGTCAGTGTGCCAATCGTCG 205
.|||||| || |||||..| ||| ||.|| .||.||||
BPUM_2905 156 GCAATTTGCTTTATCAC---CGGTCGCAGGCG-CACTG-ACCGATCG--- 197
BSNT_01398 206 GAAAGCTTTCCGACCGCTACGGCAGAAAAAAACTCTTTCTCATTG--AGG 253
.||..||| |.|||||| ||..|||||| .||
BPUM_2905 198 ------ATTTGGAC-------GTAGAAAA------TTGATCATTGCTGGG 228
BSNT_01398 254 TTTGC---CTGTTCGGACTTG----GT---TCTTTGCTTGTTGCTTTGAG 293
.|.|| ||.|.| |.||| || |.|||||.| |||| |||.
BPUM_2905 229 ATCGCAGGCTTTAC--AATTGCCCAGTTTATTTTTGCAT-TTGC--TGAT 273
BSNT_01398 294 CCAAAGCTT--CCCGCTCTTTCTGATATCGCGGCTGATTCAGGCGCTTGG 341
| ||||| ...|||.|||.|| ||.||..| ||.|||||.|
BPUM_2905 274 C---AGCTTTGGATGCTGTTTGTG---TCTCGATT--TTTAGGCGGT--- 312
BSNT_01398 342 AGGCGGCGGGA--TTTTCATCATCGGCAGCTCTCA------CATTC-TCG 382
||.||.||| |||.| |||| |.|||| || |||.| |||
BPUM_2905 313 --GCTGCCGGAGCTTTAC-TCAT-GCCAGC---CATGTTTGCATACATCG 355
BSNT_01398 383 C-GACCCT-TCCAAAGGAAAAA-----CAGGGGAAGGCACTTGGGC---- 421
| || | ||..|||..|.|| .||||.|||| |.|.||||
BPUM_2905 356 CTGA---TATCACAAGTGAGAAGGATCGAGGGAAAGG-AATGGGGCTATT 401
BSNT_01398 422 ---TGCTTGGCGCAATGAACGGGATGGCCGCTGTGCTCGGGCCAAATATC 468
|||| ||.|||| ||.|
BPUM_2905 402 TAGTGCT----GCGATGA----------CGTT------------------ 419
BSNT_01398 469 GGAAGCTTTCTGCTTGATTGGACCGGGTCTTGGCATTGGCTAT------- 511
|.||||| .|.||||||||.||..|.||| ||||||
BPUM_2905 420 --AGGCTTT----GTCATTGGACCTGGCGTAGGC---GGCTATTTGGTGG 460
BSNT_01398 512 -------------------TTTT---------GATTAATTTGCCG----- 528
|||| |.||..|||||||
BPUM_2905 461 AGTATGGGATTGCTTTTCCTTTTCTCATCGCAGGTTCCTTTGCCGCTCTT 510
BSNT_01398 529 --------ATTG-CCGTGCTATTGGTTGTTTTCGGCTCATACTTTATCGC 569
|||| ||.|.||||| .||.| ||.|.||.|||.|
BPUM_2905 511 TCTACCCTATTGTCCATCCTATT-----CTTAC--CTGAAACATTAAC-- 551
BSNT_01398 570 GGAAACAAAAGCACCTGAAGCTAAGCGCCTCGATGCGGCCGGAATC---- 615
.|||.||||||| .|||| |||| ||||| .||.|
BPUM_2905 552 -AAAAGAAAAGCA--GGAAG--AAGC--------GCGGC--TAAACAAAG 586
BSNT_01398 616 ---TTCCTTCTGTCCCTGTCGATTT-TAGCCGTGATGTACGGCATGACG- 660
||| |||| .|.|||| .||||| ..||||.|
BPUM_2905 587 ACATTC---------------ATTTCAACCCGT-TTGTAC-AAATGATGC 619
BSNT_01398 661 AACCTTGACGGGGTAAATCTCTTACACAGCTTGGGGA-ATCCGGAGGTTT 709
||.||| |||| || ||||...|||||
BPUM_2905 620 AAGCTT-------TAAA------------------GACATCCTACGGTTT 644
BSNT_01398 710 ATGGATGTATTAT------------------TTTTGGCAT-----ACTCT 736
.| ||| |||| ||||||||| |||.|
BPUM_2905 645 TT---TGT-TTATATTGGCGTTTGTCCTCAATTTTGGCATCATTCACTTT 690
BSNT_01398 737 G-------TTTTGCAGCGCTTATCTCGTATG-------AAAAGA--GAGT 770
| |||.| ||||| |||| ||||.| ||.|
BPUM_2905 691 GAATCGATTTTCG----GCTTA-----TATGTAGACCAAAAACATGGATT 731
BSNT_01398 771 T-----GAAA-----TGCG----------AGGAGGCGATCCCATTT--TG 798
| |||| |||| .||..|||..|| || ||
BPUM_2905 732 TACACCGAAAGATATTGCGTTTGTGATTACGGTTGCGGGCC---TTGCTG 778
BSNT_01398 799 GCGT-ATTCTC-----------------TGC---TGCGAAACCATATGTT 827
|||| .||.|| ||| ||.|||||.||.||.|
BPUM_2905 779 GCGTGCTTGTCCAAGGTGCATTGGTGAATGCTTTTGTGAAACGATTTGGT 828
BSNT_01398 828 TCA--GCGC-----ACGCTTA--------------------------TCA 844
..| |||| ||| ||| |||
BPUM_2905 829 GAAATGCGCGTCGTACG-TTATGCACTGCTAGGTGCGGCTTTAATGCTCA 877
BSNT_01398 845 TCGGTTTGTTATCCGG----------------GG------------GGCT 866
|| ||||| |||| || ||||
BPUM_2905 878 TC-GTTTG----CCGGATTGCGCCGTCCTTTTGGCTAATCTTTGCAGGCT 922
BSNT_01398 867 C----------TTGGCGG---CAGTCATTTTT------ATCCCGTCATA- 896
| |||.||| || ||||||.| |.|||.|.|||
BPUM_2905 923 CTATTTTATTTTTGTCGGCCACA-TCATTTGTTCGTCCAGCCCTTAATAC 971
BSNT_01398 897 -----TGTCGA-----GCA-GTATTTGGGTGTCCCTGCCGCAA----AAG 931
|||||| ||| |||.| |.|||| .||
BPUM_2905 972 ATTGCTGTCGAAAATGGCAGGTAAT------------CAGCAAGGAGTAG 1009
BSNT_01398 932 CAGGC-----------------TATTGA---------------------- 942
||||| || |||
BPUM_2905 1010 CAGGCGGTCTCAATACATCCTTTA-TGAGCCTTGCCAATATTGTTGGACC 1058
BSNT_01398 942 -------------------------------------------------- 942
BPUM_2905 1059 GAGCCTTGCGGGGATTTTATTTGATGTGAATATTGAGTTTCCTTTTATGT 1108
BSNT_01398 942 -------------------------------------------------- 942
BPUM_2905 1109 TCGGGACATTCGTGCTGTGCATAAGCTTCATTGCATCCATCGTGTGGGGG 1158
BSNT_01398 942 --------------------------------- 942
BPUM_2905 1159 AAAAAAGTGCAGCAGCGTTCTGTGATTTCCTAA 1191
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