Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01407 and BPUM_2909

See Amino acid alignment / Visit BSNT_01407 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:00
# Commandline: needle
#    -asequence dna-align/BSNT_01407___yfhA.1.24716.seq
#    -bsequence dna-align/BPUM_2909.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01407___yfhA-BPUM_2909.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01407___yfhA-BPUM_2909.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01407___yfhA
# 2: BPUM_2909
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1234
# Identity:     631/1234 (51.1%)
# Similarity:   631/1234 (51.1%)
# Gaps:         398/1234 (32.3%)
# Score: 1368.5
# 
#
#=======================================

BSNT_01407___      1 ----ATGAAACTT----CGTTTTGGCGTT---ACTGCGGCTGAA------     33
                         .|.||||.|    .||    |||||   |..||||..|.|      
BPUM_2909          1 GTGGCTAAAACATATACAGT----GCGTTCAAAGGGCGGGCGCATTTCAT     46

BSNT_01407___     34 ---AA----GAAAGCATGGATCGTCTTTTTAATTTTACTGGGGTTAACAG     76
                        ||    .|||||  ||| ||  |||||.||||||||....||.||.|
BPUM_2909         47 TTCAATTTTCAAAGC--GGA-CG--TTTTTGATTTTACTTTTATTGACGG     91

BSNT_01407___     77 C---TGC----------TGTACTCATCATAAGCGCAGGTCTC------GG    107
                     |   |||          |.||.|| |||         |||||      ||
BPUM_2909         92 CCATTGCTTTTGGATTATTTATTC-TCA---------GTCTCTGTATGGG    131

BSNT_01407___    108 ACAAAGGTTTATTCCTCCCTGGGATGTAGCAAAAACATTCTTTGGTGCA-    156
                     .....||||||||.|.||...|||||| ||       |||||     || 
BPUM_2909        132 TAGCCGGTTTATTTCGCCTATGGATGT-GC-------TTCTT-----CAT    168

BSNT_01407___    157 ------GGTTCCAA--------------------GCTGGATGAACTGATG    180
                           |||  |||                    |||..||..|||||  
BPUM_2909        169 TTAATCGGT--CAAGGAGAGGGAAATACCTTTGTGCTCAATACACTGA--    214

BSNT_01407___    181 ATCATGTCGTTCCGCATGCCAAGAATTTTGACAGCT---TTA--------    219
                                  |.||.|||||||..|||...|||   |||        
BPUM_2909        215 -------------GAATTCCAAGAACATTGCTGGCTGTCTTAGTGGGGGC    251

BSNT_01407___    220 TGCGC---CGGTGTC--TGCTTGGCAGCGGCAGGCGCGATATTGCAGGGG    264
                     |||||   ||||.||  .||||                ||.|||||.||.
BPUM_2909        252 TGCGCTTGCGGTATCAGGGCTT----------------ATTTTGCAAGGA    285

BSNT_01407___    265 CTCGTCAGAAACCCTCTCGCATCTCCGGATATTATCGGAATAACAGGAGG    314
                     .|..||.|.||.||.||.|||||.||.||.||.||.||.||.||..|.||
BPUM_2909        286 TTAATCCGCAATCCGCTTGCATCGCCTGACATCATTGGGATTACGAGTGG    335

BSNT_01407___    315 AGCGGCGGTAGCGGT-CGTGCTTTTAATGATGTT-----CTTCTCAGACC    358
                     .||..||.|  |||| ||        ||.|||||     .||.|..||..
BPUM_2909        336 TGCTTCGTT--CGGTGCG--------ATTATGTTTATTGTTTTTTGGATG    375

BSNT_01407___    359 GCAGCAGTTCAC---TTACG-ATCAGTCTGTCATG---GCTTCCAGCAGC    401
                     |  |||.|..||   ||.|| ||||.|| .|.|||   |.||   ||||.
BPUM_2909        376 G--GCACTGTACCTATTGCGTATCAATC-CTTATGGGCGATT---GCAGG    419

BSNT_01407___    402 CGCATTTATCGGCGCATCGGCTGTCGGGCTCATCGTC-----TATTTACT    446
                     .||.|||            |||||    |||.| |||     |||||.||
BPUM_2909        420 GGCTTTT------------GCTGT----CTCGT-GTCTGATTTATTTGCT    452

BSNT_01407___    447 GGCATACAAAAA-----TGGCGCC--TCCACATTTCGGCTGGTGCTGATC    489
                     ..|||..|||||     ||..|||  | ||||      ||.||.||.||.
BPUM_2909        453 TTCATGGAAAAAAGGGGTGAAGCCAAT-CACA------CTTGTCCTAATG    495

BSNT_01407___    490 GGAATCGGATTTTCAATGTCGGC--GCAGGCG---ATGAC---TACCCT-    530
                     ||.|||||..||||  ||.|..|  |.|||||   .||||   |||.|| 
BPUM_2909        496 GGCATCGGGATTTC--TGCCATCATGAAGGCGTGTGTGACGTTTACTCTA    543

BSNT_01407___    531 GTT-----------GATGA-----TCAAAGGTCCGATTTA--------CC    556
                     |||           |||||     .|||| |||  ||.||        .|
BPUM_2909        544 GTTCTTAGTGATACGATGACGACGACAAA-GTC--ATATATTTGGCTGAC    590

BSNT_01407___    557 GGGCATCACAAGCCAATGTGTATATCACTGG----------------GTC    590
                     |||||            ||.||||    |||                |||
BPUM_2909        591 GGGCA------------GTTTATA----TGGTTCTACGATGAAGGACGTC    624

BSNT_01407___    591 A-GTTTATGGGTCAAACTGGCAGCATGTAAAAATAGCTATTATCTTATC-    638
                     | ||..|||..||   ||.|.|.||||           ||.||.|||.| 
BPUM_2909        625 ACGTCGATGCTTC---CTTGGATCATG-----------ATCATTTTACCG    660

BSNT_01407___    639 --TGTCATTCTCTTATTCATTTGTTTTGTCGCGCTAAAAAATATGAATAT    686
                       ||||||..|.|||                 || ||.||..||||||.|
BPUM_2909        661 ATTGTCATGGTGTTA-----------------GC-AAGAACGATGAATGT    692

BSNT_01407___    687 ACAGGTGCTGGGTGAAGATATTGC-----GGC---GGGTGCAGGAAGCGC    728
                     ..|||.|||.||.||.|||.||||     |||   |||||.|        
BPUM_2909        693 GAAGGAGCTTGGAGATGATCTTGCCACAGGGCTTGGGGTGAA--------    734

BSNT_01407___    729 TGTGCAGCGAAATCGTTTTTTCTTGCTACTTTTGAGTACGGCTCTTACTG    778
                     .||||||..|||..|..|.|||||.|||||..|||||..|.|    |.||
BPUM_2909        735 AGTGCAGGCAAAAAGGCTATTCTTTCTACTGATGAGTGTGAC----ATTG    780

BSNT_01407___    779 GTTG----TGCAGTTTCAGTTGCCGGCACAATCGGTTTTGTCGGGCTGAT    824
                     |..|    |||.|||.|..||||.|||...||.|..|||||.||.|||||
BPUM_2909        781 GCGGGGATTGCCGTTGCCTTTGCTGGCGGTATTGAATTTGTTGGACTGAT    830

BSNT_01407___    825 GGCGCCCCATATTGCAAGACGGCTTGTCGGCTCATCTTATGGC-------    867
                     ||||||.|||.||||   ||||.|     |.|||||    |||       
BPUM_2909        831 GGCGCCGCATGTTGC---ACGGAT-----GATCATC----GGCCGTTCCT    868

BSNT_01407___    868 -----GCGCTGCTCCCAGCGTCGGCACTTATT-GGAG----CTC----TG    903
                          ||||||.|.||.||.||.||.|||.|| ||||    |||    ||
BPUM_2909        869 TCATTGCGCTGGTTCCGGCATCTGCGCTTGTTGGGAGCATTCTCGTGATG    918

BSNT_01407___    904 CTCGTTTTAACAGCTGATATCGTCGGCAGAAC--CTTATTTGCT-CCGGT    950
                     |||         ||.|||.|.||||..|||||  |   |||.|| ||..|
BPUM_2909        919 CTC---------GCAGATTTAGTCGCTAGAACGGC---TTTTCTACCATT    956

BSNT_01407___    951 GGAAGTGCCGGCCGGCGTCTTTACAGCGGCTATCGGCGCACCTTATTTTA   1000
                     .||.||.||.||.||.||.||.|||||.||.||.||.|||||.|..||||
BPUM_2909        957 AGATGTACCAGCAGGTGTATTCACAGCTGCAATTGGGGCACCGTTCTTTA   1006

BSNT_01407___   1001 TTTATTTGCTCTATA-AAACA-AGAAATTCTTAA   1032
                     ||||||||  .|||| .|.|| ||||||...|||
BPUM_2909       1007 TTTATTTG--TTATACCAGCAGAGAAATCGATAA   1038


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.