Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04842 and BPUM_2924

See Amino acid alignment / Visit BSNT_04842 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:34
# Commandline: needle
#    -asequence dna-align/BSNT_04842___yurV.1.24716.seq
#    -bsequence dna-align/BPUM_2924___nifU.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04842___yurV-BPUM_2924___nifU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04842___yurV-BPUM_2924___nifU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04842___yurV
# 2: BPUM_2924___nifU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 463
# Identity:     354/463 (76.5%)
# Similarity:   354/463 (76.5%)
# Gaps:          35/463 ( 7.6%)
# Score: 1391.5
# 
#
#=======================================

BSNT_04842___      1 ATGTCTTTTAATGCAAACTTAGATACATTGTACAGACAGGTGATTATGGA     50
                     |||||||||||||.|||||||||.|||.||||||||||.|||||||||||
BPUM_2924___n      1 ATGTCTTTTAATGTAAACTTAGACACACTGTACAGACAAGTGATTATGGA     50

BSNT_04842___     51 TCATTACAAAAACCCGCGAAATAAAGGGGTTTTGAATGACAGCATTGTCG    100
                     ||||||.|||||.|||.||||.|||||.||.||.||.|||||||||||||
BPUM_2924___n     51 TCATTATAAAAATCCGAGAAACAAAGGTGTGTTAAACGACAGCATTGTCG    100

BSNT_04842___    101 TGGATATGAACAATCCGACATGCGGCGACCGCATCAGACTGACAATGAAG    150
                     |.|||||||||||.||.||.||.||.||||||||..|.||.||.|||||.
BPUM_2924___n    101 TCGATATGAACAACCCAACGTGTGGTGACCGCATTCGTCTCACGATGAAA    150

BSNT_04842___    151 CTTGACGGAGACATCGTGGAA---------GATGCGAAGTTTGAAGGGGA    191
                     .|   ||.||||      |||         ||||||||.||||||||.||
BPUM_2924___n    151 AT---CGAAGAC------GAAAAAGTCACCGATGCGAAATTTGAAGGAGA    191

BSNT_04842___    192 AGGCTGTTCCATTTCAATGGCATCCGCTTCGATGATGACTCAGGCCATTA    241
                     |||.||.||.|||||.||||||||.||.||.||||||||.|||||.||||
BPUM_2924___n    192 AGGATGCTCGATTTCGATGGCATCTGCCTCTATGATGACGCAGGCGATTA    241

BSNT_04842___    242 AAGGGAAAGATATTGAAACTGCCCTTT--CCATGTCTAAGATTTTCTCGG    289
                     |||||||||||||||||||.|  ||||  ..||||||.||||||||||.|
BPUM_2924___n    242 AAGGGAAAGATATTGAAACAG--CTTTGAAAATGTCTCAGATTTTCTCCG    289

BSNT_04842___    290 ATATGATGCAAGGGAAAGAGTATGATGATTCTATAGATCTCGGGGATATT    339
                     |||||||||.|||.|||||.||.||.|||||.||.|||||.||.||.|||
BPUM_2924___n    290 ATATGATGCTAGGAAAAGAATACGACGATTCCATTGATCTTGGTGACATT    339

BSNT_04842___    340 GAAGCCCTTCAAGGCGTTTCAAAATTCCCGGCCCGTATCAAATGTGCAAC    389
                     ||.||.||.|||||.||..||||||||||.|||||.||.|||||||||||
BPUM_2924___n    340 GAGGCGCTGCAAGGAGTGGCAAAATTCCCTGCCCGCATTAAATGTGCAAC    389

BSNT_04842___    390 CCTGTCTTGGAAAGCACTTGAAAAAGGAGTCGCGAAAC-----AAGAAGG    434
                     ..|.||.|||||.||.||||||||||     |||.|.|     ||||...
BPUM_2924___n    390 ATTATCATGGAAGGCGCTTGAAAAAG-----GCGCATCTGCCGAAGATAA    434

BSNT_04842___    435 CGGCAATTAA---    444
                     ||||||.|.|   
BPUM_2924___n    435 CGGCAAATCATAA    447


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