Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04851 and BPUM_2929
See
Amino acid alignment /
Visit
BSNT_04851 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:35
# Commandline: needle
# -asequence dna-align/BSNT_04851.1.24716.seq
# -bsequence dna-align/BPUM_2929.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04851-BPUM_2929.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04851-BPUM_2929.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04851
# 2: BPUM_2929
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 392
# Identity: 202/392 (51.5%)
# Similarity: 202/392 (51.5%)
# Gaps: 127/392 (32.4%)
# Score: 619.5
#
#
#=======================================
BSNT_04851 1 TTGAATCAAGA------CAGAGGAAGCATGCAG--------GACGCGTTA 36
.|||||.||.| .||.|||..||||||| |||...|||
BPUM_2929 1 ATGAATGAACAGCATATGAGCGGATCCATGCAGCAGTCACTGACTGATTA 50
BSNT_04851 37 AAACAATATAAAC----ATGGTTTAGGCACATTTGAACAAAAGATGCCGC 82
.| |||| ||||.|.| ||||.|..||||.|||||..
BPUM_2929 51 TA-------AAACGGCGATGGGTGA-----ATTTCAGAAAAAAATGCCTG 88
BSNT_04851 83 TG-ATGGGAAGAAAATTTAACGAATTTACTGAACAGTGCTTTGCCG-GGA 130
|| .||||||| |||||.||.|||||.||.||.||.|| |||.|.| |..
BPUM_2929 89 TGTTTGGGAAG-AAATTCAATGAATTCACGGAGCAATG-TTTTCAGAGCG 136
BSNT_04851 131 ATTCTCTGACTGAAAGAGAAAAACAGCTGATCGCCCTCGGAATTGCCATC 180
||||..|.||..|||..||||||||..||||.|||| |||.||||
BPUM_2929 137 ATTCATTAACGCAAAAGGAAAAACAAATGATTGCCC------TTGGCATC 180
BSNT_04851 181 A------ATGCTCAGGACGAATATTGCATGATCTATCATACAAAAGGCTG 224
| ||||.|||||||||||.||||||||.|||||||||||.||...
BPUM_2929 181 AGTATTCATGCACAGGACGAATACTGCATGATTTATCATACAAAGGGAGC 230
BSNT_04851 225 TCTCGATCAGGGAGCGACAGAAGAAAACATTCTCGAAGCCGTCAGTGTGG 274
.|||||.||.||.||.|||||||||||..|.||.||.|..|||||.||.|
BPUM_2929 231 GCTCGACCAAGGCGCAACAGAAGAAAATTTGCTAGAGGTTGTCAGCGTAG 280
BSNT_04851 275 CAGCGGCATTTTAA------------------------------------ 288
||||.||||||
BPUM_2929 281 CAGCAGCATTT---GGCGGCGGGGCAGCATTGAGCCAAGGGATTACTGTC 327
BSNT_04851 288 ------------------------------------------ 288
BPUM_2929 328 GTTCAGCAATGTATTGACGAATTTGGAGGACAGACGCATTAA 369
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.