Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04853 and BPUM_2930

See Amino acid alignment / Visit BSNT_04853 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:35
# Commandline: needle
#    -asequence dna-align/BSNT_04853___yusA.1.24716.seq
#    -bsequence dna-align/BPUM_2930.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04853___yusA-BPUM_2930.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04853___yusA-BPUM_2930.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04853___yusA
# 2: BPUM_2930
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 844
# Identity:     638/844 (75.6%)
# Similarity:   638/844 (75.6%)
# Gaps:          41/844 ( 4.9%)
# Score: 2386.0
# 
#
#=======================================

BSNT_04853___      1 TTGAAAAAGCTATTTTTGGGTGCATTACTGCTTGTATTTGCAGGAGTCAT     50
                     .||||.||..|..||||..|||||.||.|.||.|.|||||||||..|..|
BPUM_2930          1 ATGAAGAAATTGATTTTAAGTGCACTATTTCTAGCATTTGCAGGCATTTT     50

BSNT_04853___     51 GGCTGCCTGCGGT---TCGAATAACGGCGCTGAATCCGGCAAG-------     90
                     ||||||.||||||   ||.||||||             |||||       
BPUM_2930         51 GGCTGCATGCGGTTCATCTAATAAC-------------GCAAGTGATAGC     87

BSNT_04853___     91 AAAGAAATTGTCGTTGCGGCAACAAAAACACCGCATGCGGAAATTTTAAA    140
                     |||...|||...|||||.||..||||||||||.|||||.||||||.|..|
BPUM_2930         88 AAAACCATTACGGTTGCCGCTTCAAAAACACCACATGCCGAAATTCTTGA    137

BSNT_04853___    141 AGAAGCTGAACCATTGCTGAAAGAAAAAGGCTATACG--CTGAAAGTGAA    188
                     ||||||..|||||.|.||.||||||||||||  ||||  ||.||||||||
BPUM_2930        138 AGAAGCAAAACCACTTCTAAAAGAAAAAGGC--TACGATCTCAAAGTGAA    185

BSNT_04853___    189 AGTGCTTAGTGATTACAAAATGTACAATAAAGCTTTAGCTGATAAAGAAG    238
                     |||.|||||||||||.|||||||||||.|||||.||||||||.|||||||
BPUM_2930        186 AGTACTTAGTGATTATAAAATGTACAACAAAGCGTTAGCTGAAAAAGAAG    235

BSNT_04853___    239 TGGACGCGAACTACTTCCAGCACATTCCTTACCTTGAGCAAGAAATGAAA    288
                     ||||.||.||||..|||||.||.||.||||||.|..|..||||||..|||
BPUM_2930        236 TGGATGCAAACTTTTTCCAACATATCCCTTACTTAAATGAAGAAAATAAA    285

BSNT_04853___    289 GAAAACACAGATTACAAACTTGTGAATGCCGGCGCTGTTCACTTAGAGCC    338
                     ..|||||.|||||||.|.||.||||.|||.||.||.||||||.|.|||||
BPUM_2930        286 TCAAACAAAGATTACGACCTAGTGAGTGCAGGTGCGGTTCACCTTGAGCC    335

BSNT_04853___    339 ATTCGGTATTTACTCTAAAACATACAAATCACTGAAAGACCTTCCAGACG    388
                     |||||||||.||||||||.|.||||||||||.|.|||||..|||||.|||
BPUM_2930        336 ATTCGGTATCTACTCTAAGAAATACAAATCAGTAAAAGATATTCCAAACG    385

BSNT_04853___    389 GTGCGACAATCATTCTGACAAACAACGTTGCTGAACAAGGCCGTATGCTT    438
                     |||..||.|||||..|||||||||||||.|||||.|||||.|||||||||
BPUM_2930        386 GTGGCACGATCATCATGACAAACAACGTAGCTGAGCAAGGACGTATGCTT    435

BSNT_04853___    439 GCAATGCTTGAAAACGCTGG----ATTAATTACTCTTGACTCTAAA-GTT    483
                     ||..|||||.||.|.|||||    ||.||  ||||  || ||.||| |||
BPUM_2930        436 GCCCTGCTTCAACATGCTGGTGTCATCAA--ACTC--GA-TCCAAAGGTT    480

BSNT_04853___    484 GAAACAGTTGACGCAACATTG-AAAG-ACATTAAGAAAAACCCGAAAAAC    531
                     ||.|||.|..||||.||  || |||| ||||.||..|||||||.||.|||
BPUM_2930        481 GATACAATCAACGCTAC--TGTAAAGAACATCAAAGAAAACCCAAAGAAC    528

BSNT_04853___    532 CTTGAATTCAAAAAAGTAGCGCCTGAATTAACGGCAAAAGCATATGAAAA    581
                     ||..|.|||||||||.|.||.||||||.||||.||.|||||.||||||||
BPUM_2930        529 CTAAAGTTCAAAAAAATCGCTCCTGAACTAACAGCGAAAGCTTATGAAAA    578

BSNT_04853___    582 CAAAGAAGGAGACGCGGTCTTCATCAATGTAAACTATGCGATCCAAAATA    631
                     ||..|||||.||.||.||.||.|||||.||.|||||||||||||||||||
BPUM_2930        579 CAGTGAAGGCGATGCTGTGTTTATCAACGTTAACTATGCGATCCAAAATA    628

BSNT_04853___    632 AATTAAATCCTAAAAAAGATGCAATTGAAGTAGAATCAACGAAAAACAAC    681
                     ||||.|||||.|||||.|||.||||.|||.|.||...|||.||.||||||
BPUM_2930        629 AATTGAATCCGAAAAACGATTCAATCGAACTTGAGCAAACAAAGAACAAC    678

BSNT_04853___    682 CCATACGCTAACATCATCGCAGTAAGAAAAGGCGAAGAAGATTCTGCAAA    731
                     |||||.||.|||||..|.||.||..|.|||||.||||||.|.||.|..||
BPUM_2930        679 CCATATGCAAACATTGTGGCGGTTCGCAAAGGTGAAGAAAAATCAGATAA    728

BSNT_04853___    732 AATCAAAGCGCTGATGGAAGTTCTTCACTCTAAAAAGATCAAAGACTTCA    781
                     .|||||..|..|.||||||||||||||||||.|.||.||||||||.||||
BPUM_2930        729 GATCAAGACTTTAATGGAAGTTCTTCACTCTGATAAAATCAAAGAATTCA    778

BSNT_04853___    782 TCGAGAAAAAATACGACGGAGCTGTGCTTCCTGTATCTGAATAA    825
                     ||||.||||||||.|||||.|||||.||.||.||||||||||||
BPUM_2930        779 TCGATAAAAAATATGACGGTGCTGTACTACCGGTATCTGAATAA    822


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