Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04854 and BPUM_2931

See Amino acid alignment / Visit BSNT_04854 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:35
# Commandline: needle
#    -asequence dna-align/BSNT_04854___yusB.1.24716.seq
#    -bsequence dna-align/BPUM_2931.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04854___yusB-BPUM_2931.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04854___yusB-BPUM_2931.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04854___yusB
# 2: BPUM_2931
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 680
# Identity:     513/680 (75.4%)
# Similarity:   513/680 (75.4%)
# Gaps:          22/680 ( 3.2%)
# Score: 1888.5
# 
#
#=======================================

BSNT_04854___      1 ATGTTTGAAAAATACTTCCCGAACGTTGATTTAACTGA----ATTATGGA     46
                     ||||||||.||||..||.|||||||||||||||   ||    ||| ||||
BPUM_2931          1 ATGTTTGAGAAATGGTTTCCGAACGTTGATTTA---GAAGTCATT-TGGA     46

BSNT_04854___     47 ACGCGACATATGAAACACTTTATATGACGCTGATTTCTTTACTGTTTGCT     96
                     |.||.||...||||||..||||||||||.||.|||||.||...||||||.
BPUM_2931         47 ATGCAACGGGTGAAACGGTTTATATGACACTCATTTCATTGGCGTTTGCC     96

BSNT_04854___     97 TTTGTCATCGGGGTCATCCTCGGCTTGCTGCTCTTTCTGACGAGCAAAGG    146
                     |||||.|||||..|.||.||.||..|.|||||.||.||.||..|.|||||
BPUM_2931         97 TTTGTGATCGGAATTATTCTTGGACTCCTGCTTTTCCTTACTGGAAAAGG    146

BSNT_04854___    147 AAGCCTCTGGCAGAATAAAGCGGTCAACTCTGTGATTGCGGCCGTTGTTA    196
                     ..|.||.|||.|.||||||.||.||||..||||.||.|..||.||.||.|
BPUM_2931        147 TGGTCTTTGGGAAAATAAACCGATCAATGCTGTCATCGGTGCAGTCGTCA    196

BSNT_04854___    197 ACATATTCAGATCGATTCCGTTCCTTATTTTAATTATTTTACTATTAGGT    246
                     ||||.||||||||||||||.||..|.||||||||||||.|..|||||||.
BPUM_2931        197 ACATTTTCAGATCGATTCCTTTTATCATTTTAATTATTCTTTTATTAGGG    246

BSNT_04854___    247 TTTACGAAATTTTTAGTCGGC--ACGATCTTAGGGCCAAACGCCGCTTTG    294
                     ||.||||||||.|||.|  ||  ||.||..||||.|||||.||.||..||
BPUM_2931        247 TTCACGAAATTCTTAAT--GCATACAATTCTAGGTCCAAATGCAGCACTG    294

BSNT_04854___    295 CCGGCGCTGGTAATCGGCTCGGCACCATTTTACGCGCGCCTTGTTGAAAT    344
                     ||.||.||.||.||.||.||.||.|||||.||.||.||.|||||.|||||
BPUM_2931        295 CCTGCCCTTGTCATTGGGTCAGCTCCATTCTATGCACGTCTTGTCGAAAT    344

BSNT_04854___    345 CGCGCTGCGTGAGGTGGATAAAGGTGTGATTGAAGC----CGCTAAATCA    390
                     .||||||||||||||.||.|||||.||.||||||||    |||    |||
BPUM_2931        345 TGCGCTGCGTGAGGTAGACAAAGGAGTCATTGAAGCAGCACGC----TCA    390

BSNT_04854___    391 ATGGGCGCGAAAACGTCTACGATTATTTTCAAAGTGTTGATTCCGGAATC    440
                     |||||.|||||||||||.||.||.||.||||||||.|||.|.||.|||||
BPUM_2931        391 ATGGGAGCGAAAACGTCGACCATCATATTCAAAGTATTGCTGCCAGAATC    440

BSNT_04854___    441 AATGCCTGCTCTTATTTCTGGCATTACGGTTACTGCCATCGCTTTGATCG    490
                     |.||||.||.||.|||||.||.|||||.||.||.||.||.|||||.||.|
BPUM_2931        441 ATTGCCAGCCCTCATTTCAGGTATTACCGTAACAGCGATTGCTTTAATTG    490

BSNT_04854___    491 GCTCAACGGCAATTGCCGGAGCCATTGGTTCAGGAGGCCTTGGAAACCTT    540
                     |||||||.||.|||||.||.||.|||||..||||.||.|||||..|||||
BPUM_2931        491 GCTCAACTGCGATTGCAGGTGCAATTGGAGCAGGTGGACTTGGTGACCTT    540

BSNT_04854___    541 GCGTACGTAGAAGGATATCAGTCTAATAACGCTGATGTTAC-CTTCGTTG    589
                     ||.||.||.||||||||.||.|||..|||..|.|||||.|| ||| .|||
BPUM_2931        541 GCCTATGTGGAAGGATACCAATCTGGTAATACAGATGTCACACTT-TTTG    589

BSNT_04854___    590 CTACTGTGTTTATTTTAATCATCGTGTTTATTATTCAAATCATCGGTGAT    639
                     |.||||||||||||.|.||||||||.||||||||||||||.|||||||||
BPUM_2931        590 CCACTGTGTTTATTCTCATCATCGTCTTTATTATTCAAATAATCGGTGAT    639

BSNT_04854___    640 CTAATAACAAATATTATAGACAAACGATAA    669
                     .|.||.|||||||..||.||.|||||||||
BPUM_2931        640 TTGATTACAAATAAAATTGATAAACGATAA    669


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