Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04858 and BPUM_2934
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:35
# Commandline: needle
# -asequence dna-align/BSNT_04858___yusD.1.24716.seq
# -bsequence dna-align/BPUM_2934.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04858___yusD-BPUM_2934.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04858___yusD-BPUM_2934.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04858___yusD
# 2: BPUM_2934
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 388
# Identity: 220/388 (56.7%)
# Similarity: 220/388 (56.7%)
# Gaps: 89/388 (22.9%)
# Score: 523.5
#
#
#=======================================
BSNT_04858___ 1 ATGGAGAAAGCGGAAGTTTTAGAA--GATGAGTATCA----GCATC---T 41
.||||.|||| |.|.|| .||| |||.|| |||.| |
BPUM_2934 1 GTGGAAAAAG--------TGAAAACCCATG-GTAACAAAGGGCAGCGCTT 41
BSNT_04858___ 42 GTTTTTAAAACCCCTTTTGAATGC-CTCAACA------TTGCTCATTACC 84
.||..|||||||.| ||| ||||.|| |||...|||||.
BPUM_2934 42 ATTGCTAAAACCGC-------TGCTCTCATCATCATCCTTGAAGATTACA 84
BSNT_04858___ 85 TTCCAAGGAGAAGCAGAAGCCTTAACCGTCT----CAATAA------ACG 124
|| .||.||.|||.| |.|| ||| ||.|.| |.|
BPUM_2934 85 TT------TGAGGCGGAAAC--TGAC--TCTTGTACATTGATTGTGGATG 124
BSNT_04858___ 125 AACAGGGAGAAATGAAAAAAGTTTCTCCGCCCCAAACG-----TCCAACC 169
|.|..||.|||.||||.|||.|..|| .|||..| ||..|.|
BPUM_2934 125 AGCGTGGTGAAGTGAAGAAACTACCT-----GCAATTGAGTTATCGGATC 169
BSNT_04858___ 170 TGACCTTTTACG--GAAACCAAACGGAAATTATTGATTTATTGCACGGAG 217
|.|.||||||.| ||.|..||| |||||..|..|.|||||..|.||||
BPUM_2934 170 TTATCTTTTATGGTGAGAGAAAA--GAAATACTACAATTATTAGATGGAG 217
BSNT_04858___ 218 ACATTTCCCTTCAGCACCTGATTCAG-AGCGG--AAGCCTCAAAGTAAAG 264
|.||.|||.|.|||||..|.||| || ||.|| ||| |.||||||||.
BPUM_2934 218 ATATGTCCTTACAGCAGTTAATT-AGCAGGGGACAAG--TGAAAGTAAAA 264
BSNT_04858___ 265 GGGTCATTCAGGGCCCTGTTAAAGCTGGAAGCCATTCTCTGGCTGACAAA 314
|||||||||.|.||.||..|||..||.||.||..|.|||||||||||.||
BPUM_2934 265 GGGTCATTCCGCGCGCTCCTAAGACTAGAGGCGGTGCTCTGGCTGACGAA 314
BSNT_04858___ 315 TGGATTTTTTCAGAGGGTTTTAAAAAAT--TAA----- 345
.||.||||||| .|||||| |||
BPUM_2934 315 CGGTTTTTTTC----------GAAAAATGATAACGTAG 342
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