Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04865 and BPUM_2940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:36
# Commandline: needle
# -asequence dna-align/BSNT_04865___yusJ.1.24716.seq
# -bsequence dna-align/BPUM_2940.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04865___yusJ-BPUM_2940.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04865___yusJ-BPUM_2940.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04865___yusJ
# 2: BPUM_2940
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1814
# Identity: 1315/1814 (72.5%)
# Similarity: 1315/1814 (72.5%)
# Gaps: 61/1814 ( 3.4%)
# Score: 4536.0
#
#
#=======================================
BSNT_04865___ 1 ATGGCAAAAAAAACGGCTGGA----GTACAAAAAGGCGGCGGATTTTTAA 46
||| |||..|| |||| |||.||||.||.||..|.||.||||
BPUM_2940 1 ATG---AAAGCAA----TGGAAGAGGTAAAAAAGGGTGGAAGCTTCTTAA 43
BSNT_04865___ 47 TCGAGGATGTC-ACATACGATCAAATGTATACACCGGAGGATTTCACTGA 95
|.||.|| |.| |..||.||.||.||.|.||||||.|||||||||.||||
BPUM_2940 44 TTGATGA-GACGAATTATGAGCATATCTTTACACCAGAGGATTTCTCTGA 92
BSNT_04865___ 96 CGAGCATAAAATGATTGCGAAA-ACAACGGAGGATTACATCGAGCAAGAT 144
.||||||.||||||||| |||| |||||.||||||||.||....|||||.
BPUM_2940 93 TGAGCATCAAATGATTG-GAAAGACAACAGAGGATTATATTTTACAAGAC 141
BSNT_04865___ 145 GTTCTCCCTCATATAGATGATATCGAAAACCACCAATTCGAGCATTCTGT 194
|||.|.||..||||||||.|.||.|||||.||..||||.||||||||.||
BPUM_2940 142 GTTGTTCCATATATAGATCAAATTGAAAAGCATGAATTTGAGCATTCCGT 191
BSNT_04865___ 195 CA-GATTGTTGAAGAAAGCGGGCGAACTAGGGCTGCTTGGCGCCGATGTG 243
|| |.||.|| ||.||.||.||.||.||.||||||||.||.|||||.|||
BPUM_2940 192 CAGGCTTCTT-AAAAAGGCTGGAGAGCTTGGGCTGCTAGGAGCCGACGTG 240
BSNT_04865___ 244 CCAGAAGAATACGGCGGGCTCGGCCTAGATAAAATCAGCTCGGCACTCAT 293
||.|||||||.|||.|||||.||..|||||||||||||.||.||..|.||
BPUM_2940 241 CCTGAAGAATTCGGAGGGCTTGGATTAGATAAAATCAGTTCAGCTATTAT 290
BSNT_04865___ 294 CACTGAGAAATTTTCGCGTGCGGGAAGCTTTTCTCTTTCTTATGGCGCGC 343
.||.||||||||.||..|.||.||.|||||.||.|||||.||||||||.|
BPUM_2940 291 TACCGAGAAATTCTCCAGAGCAGGGAGCTTCTCGCTTTCCTATGGCGCCC 340
BSNT_04865___ 344 ATGTCGGTATCGGTTCCTTGCCGATCGTCTTTTTCGGATCAGAAGAACAA 393
|||||||.||.||.||..||||.|||||..|.||||||....|||..|||
BPUM_2940 341 ATGTCGGCATTGGATCTCTGCCAATCGTACTGTTCGGAAACCAAGCGCAA 390
BSNT_04865___ 394 AAGAAAAAATATTTACCTGGACTCGCTTCAGGCGAAAAGATCGCCGCTTA 443
|||.|||..|||.|.||.|||||.|||||.||.||||.|||.||.||.||
BPUM_2940 391 AAGGAAACGTATCTGCCAGGACTTGCTTCTGGAGAAACGATAGCGGCGTA 440
BSNT_04865___ 444 TGCTCTGACTGAGCCTGGCTCTGGGTCTGATGCACTTGGAGCAAAAACAA 493
|||.||.|||||.||.||.||.||.|||||.||.|||||||||||.||||
BPUM_2940 441 TGCCCTAACTGAACCAGGATCAGGCTCTGACGCTCTTGGAGCAAAGACAA 490
BSNT_04865___ 494 CAGCTGTGCTGAATGAAGCAGGAACCCATTATGTATTAACAGGGGAAAAA 543
|.||.|||.|.||||||||.||.|||||||||||.||.|..|||||||||
BPUM_2940 491 CTGCGGTGTTAAATGAAGCCGGTACCCATTATGTGTTGAATGGGGAAAAA 540
BSNT_04865___ 544 CAGTGGATTACCAACTCTGCTTTTGCCGATGTATTTGTGGTTTACGCCAA 593
||||||||.||.|||||.||.||||||||.||.|||||.||.||.||.||
BPUM_2940 541 CAGTGGATCACAAACTCCGCATTTGCCGACGTCTTTGTCGTATATGCGAA 590
BSNT_04865___ 594 GGTAGACGGCGACAAGTTTTCAGCCTTTATTGTAGAAAAAGAGTTCCCGG 643
..|.||.||.||..|.||.||.||.|||||.||||||||.||.||.||.|
BPUM_2940 591 AATTGATGGTGAACACTTCTCTGCTTTTATCGTAGAAAAGGATTTTCCTG 640
BSNT_04865___ 644 GTGTCTCCACCGGACCGGAAGAAAAGAAAATGGGAATCAAGGGATCATCG 693
|||||...||.|||||.|||||.||.||.|||||.||.||.||.||.||.
BPUM_2940 641 GTGTCAAAACGGGACCTGAAGAGAAAAAGATGGGCATTAAAGGGTCCTCA 690
BSNT_04865___ 694 ACAAGAACCCTCATTCTGGATCAAGCTGAAGTGCCAACGGAAAACCTGCT 743
||.|||||..|.||.||.||..|.|||.|||||||||..||.||..|.||
BPUM_2940 691 ACGAGAACGTTAATCCTTGAGGATGCTCAAGTGCCAAAAGAGAATTTACT 740
BSNT_04865___ 744 CGGAGAAATCGGCAAAGGGCATGTCATTGCCTTTAATATTTTAAACATCG 793
.||.||....||||.|||.|||||||||||||||||.||||||||.||||
BPUM_2940 741 AGGTGAGGCTGGCAGAGGTCATGTCATTGCCTTTAACATTTTAAATATCG 790
BSNT_04865___ 794 GCCGTTACAAACTGGCGGTTGGCACAATCGGCGCATCTAAACGCGTCATC 843
|.||.|||||.|||||.||.||.|||.|.|||||.||.|||||.|||||.
BPUM_2940 791 GACGCTACAAGCTGGCTGTCGGGACAGTTGGCGCGTCAAAACGTGTCATT 840
BSNT_04865___ 844 GAGCTGTCTGCGTCATACGCAAATCAGCGCCGCCAATTTAAAACGCCGAT 893
.|..|.||.||...|||||||||.|||||....|||||..|||||||.||
BPUM_2940 841 CAATTATCGGCAGAATACGCAAACCAGCGTAAGCAATTCCAAACGCCCAT 890
BSNT_04865___ 894 TGCTGGTTT----TTCATTGACACAG-GAAAAAATCGGGACAATGGCCTC 938
|.||.|.|| ||.|||| | ||||||.|.|..|..|||.|..|
BPUM_2940 891 TTCTCGCTTTAGCTTAATTG-----GTGAAAAAGTAGCCAACATGTCGGC 935
BSNT_04865___ 939 AAGGCTGTATGCGATGGAAAGCTCTGTATACAGAACCGTCGGGCTGTTTG 988
||.|||.||||||||||||||..||||.|||.|.||.|||||..|.||||
BPUM_2940 936 AAAGCTCTATGCGATGGAAAGTGCTGTTTACCGCACAGTCGGATTATTTG 985
BSNT_04865___ 989 AAGACAATATGAGCCAGTTCACGGCGGAAGATCTCAAGGACGGCCGGCAA 1038
||.|...||||.|.|..||.|..|..|||||.|..|||||||||...|||
BPUM_2940 986 AACAGCGTATGGGTCTATTAAGTGAAGAAGACCAAAAGGACGGCAAACAA 1035
BSNT_04865___ 1039 ATTGCCAAATCGATTGCGGAATACGCTATCGAATGCTCTCTGAATAAAGT 1088
||||||.|.||.|||||.|||||.||.||.|||||||||||...||||||
BPUM_2940 1036 ATTGCCCAGTCCATTGCAGAATATGCCATTGAATGCTCTCTTTGTAAAGT 1085
BSNT_04865___ 1089 ATTCGGCTCTGAAACGCTTGATTATATCGTTGATGAAGGCGTGCAGATTC 1138
..|.|||||||||||..|.||.|||||.|..|||||.||.||||||||||
BPUM_2940 1086 GCTTGGCTCTGAAACTTTAGACTATATTGCGGATGAGGGTGTGCAGATTC 1135
BSNT_04865___ 1139 ATGGAGGCTACGGCTTTATGCAGGAGTACGAAGTAGAAAGGGCCTATAGG 1188
|.||.||.||.||.||||||||.||.||.||.||.|||||.||||||.|.
BPUM_2940 1136 ACGGTGGATATGGATTTATGCAAGAATATGAGGTCGAAAGAGCCTATCGT 1185
BSNT_04865___ 1189 GATTCAAGGATCAATCGGATTTTTGAAGGCACAAACGAAATCAACCGGTT 1238
||.||..||||.||.||.|||||||||||.|||||||||||||||||..|
BPUM_2940 1186 GACTCCCGGATTAACCGTATTTTTGAAGGAACAAACGAAATCAACCGTCT 1235
BSNT_04865___ 1239 AATCGTGCCAAGCACCTTCCTGAAAAAAGCGCTTAAAGGCGAGCTGTCT- 1287
..|.||.|||.||||.||..||||.||||||.|.||.||.|||||..||
BPUM_2940 1236 GCTAGTCCCAGGCACATTTTTGAAGAAAGCGATGAAGGGAGAGCTTCCTC 1285
BSNT_04865___ 1288 TTATTCGAAAAAGCGCAGTCGCTGCAGGAAGAACTCATGATGCTTATGCC 1337
||.||| ||||.|||||..|..|.||||||||.|||||||||.|.|||||
BPUM_2940 1286 TTCTTC-AAAAGGCGCAAACCTTACAGGAAGAGCTCATGATGATGATGCC 1334
BSNT_04865___ 1338 TGAAGAGCCTGG----AAGCGGCGTCTTAGAGCAGGAGAAATATATCGTC 1383
.||||||||||| .|||.|| |.||.||.||.||||||.|..|.
BPUM_2940 1335 GGAAGAGCCTGGTGATCAGCCGC----TTGATCAAGAAAAATATTTGCTT 1380
BSNT_04865___ 1384 AAGCAAGCCAAAAAAATTGCGTTGTTTGCTG----CCGGCCTAGCCGCGC 1429
...||.||.|||||.||.|| |||..|| |.||..|.||.|||.
BPUM_2940 1381 GCCCATGCGAAAAAGATCGC----TTTAATGGTATCTGGAATGGCGGCGA 1426
BSNT_04865___ 1430 AAAAATACGGAAAAGCGATCGATCGTGAGCAAGAAATTCTCGTGAACGTA 1479
..||.||.|||||||||.|.||....||||||||.|||||.||||||.||
BPUM_2940 1427 TGAAGTATGGAAAAGCGTTAGACAAAGAGCAAGAGATTCTTGTGAACATA 1476
BSNT_04865___ 1480 GCGGATATCGTCA--GCAATGTATACGCAATG--GAATCAGCCGTGCTCA 1525
||||||||||||| |.|||.|.|.| || |||||.||..|.||..
BPUM_2940 1477 GCGGATATCGTCAATGAAATTTTTGC----TGCTGAATCGGCGATTCTGC 1522
BSNT_04865___ 1526 GAACGGAAAAGGCCATTGCCGCACAAGGCGCTGAAAAAGCA-GCGCAAAA 1574
|.||.||||||||.||.||.|||..||| |||..|.|||.| .|.|||||
BPUM_2940 1523 GTACTGAAAAGGCAATCGCTGCATCAGG-GCTAGATAAGAATACTCAAAA 1571
BSNT_04865___ 1575 G-GTGCTGTACACAGAAATTTTCGTTCAAGAGGCCT--TTAACGAAATTG 1621
| .|||| ||||||.||||.|||...||.||||||| |||| ||||||
BPUM_2940 1572 GCTTGCT-TACACACAAATATTCACGCAGGAGGCCTTCTTAA--AAATTG 1618
BSNT_04865___ 1622 AAGCGCATGCGAAGGAATCCCTTATCGCAATGGAAGAAGGAGATTCACTC 1671
||||.|||||.||.||||||.|.|||||.|||||||||||||||.|||||
BPUM_2940 1619 AAGCCCATGCAAAAGAATCCTTGATCGCGATGGAAGAAGGAGATGCACTC 1668
BSNT_04865___ 1672 CGCATGATGCTTTCCGCTCTGCGCAAGCTGACACGCGTAACGCCTAAAAA 1721
|||||||..|||||.|||||.|||||.||||||.|..|.||.||.|..||
BPUM_2940 1669 CGCATGAGTCTTTCAGCTCTTCGCAAACTGACAAGATTCACCCCGATCAA 1718
BSNT_04865___ 1722 TGTGATTCAGAAAAAACGCGAGGCGGCGGCAGGCATTTTTGAGGCTGAGA 1771
|||.||....|||||.|||||.|.||||..|.|.||.|||||.||.||||
BPUM_2940 1719 TGTCATCGCCAAAAAGCGCGAAGTGGCGAAACGAATCTTTGAAGCAGAGA 1768
BSNT_04865___ 1772 AATATACTGTCTGA 1785
||||||..||.|.|
BPUM_2940 1769 AATATATCGTATAA 1782
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