Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04908 and BPUM_2951
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence dna-align/BSNT_04908.1.24716.seq
# -bsequence dna-align/BPUM_2951.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04908-BPUM_2951.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04908-BPUM_2951.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04908
# 2: BPUM_2951
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 912
# Identity: 448/912 (49.1%)
# Similarity: 448/912 (49.1%)
# Gaps: 288/912 (31.6%)
# Score: 1127.0
#
#
#=======================================
BSNT_04908 0 -------------------------------------------------- 0
BPUM_2951 1 ATGAAAAGGACAGCCATTGTAACTGGTGCCAATAGCGGCTTTGGCAAGCT 50
BSNT_04908 0 -------------------------------------------------- 0
BPUM_2951 51 CATCACGATAGGCCTCGCCAAACAAGGCTATACAGTGATTGCAGGTGTCA 100
BSNT_04908 0 -------------------------------------------------- 0
BPUM_2951 101 GGCAGGAAGCCAATGCGAAAAAGCTTGCCGAAGAAATCGAGCAAGCCTCT 150
BSNT_04908 1 GTGTCTGATTCTATTCACATTACAGCTCTCGATGTCACCGATGAACAATC 50
.|.|||||..|.||.||.|||.||||..|.|||||.|||||....||.||
BPUM_2951 151 TTATCTGAAGCAATACATATTGCAGCATTAGATGTGACCGACACGCAGTC 200
BSNT_04908 51 TAT---AGTCTCATTC-GGAAAAGC--CATTAGTGCTTACGCCCCGATCG 94
.|| |||.| ||| |.|||||| || |.||||||||||.||..
BPUM_2951 201 GATTCAAGTAT--TTCAGAAAAAGCTACA----TACTTACGCCCCCATTA 244
BSNT_04908 95 ACTTACTCGTTAACAACGCCGGAACGGCTTATGGAGGATTTATCGAGGAT 144
.|||.||.||.|||||.||||||||.||.||||..||.|||...||.||.
BPUM_2951 245 CCTTGCTTGTCAACAATGCCGGAACAGCCTATGCCGGTTTTGCTGAAGAG 294
BSNT_04908 145 GTGCC-GATGGAACATTTCAGAGAACAATTTGAAACG--AATGTCTTCGG 191
||.|| |.||..|| .|||.|..|.|||||| ||.| |||||.|||||
BPUM_2951 295 GTTCCTGTTGATAC-GTTCCGCCAGCAATTT--AATGTCAATGTTTTCGG 341
BSNT_04908 192 TGTGATCCATGTGACAAAAACCGTTCTCCCTTACATAAGAAAGCATGGCG 241
.||.||..|.||||||.||.||||.||.||.|..||.|.||| .|
BPUM_2951 342 AGTCATGGAAGTGACACAAGCCGTCCTTCCGTTTATGACAAA------TG 385
BSNT_04908 242 GCGCAAAGATTATAAACGTGAGCAGCATCAGCGGACTGACCGGATTCCCA 291
|.||||||||..|.||..|||||||||||||||||.|.|..|||.|.||.
BPUM_2951 386 GTGCAAAGATATTCAATATGAGCAGCATCAGCGGATTAATGGGAATGCCC 435
BSNT_04908 292 GCGCTGTCGCCATATGTTTCTTCTAAGCATGCATTGGAAGGTTTTTCTGA 341
||.||.||.||.|||||.||.||.|||..|||.||.||.||.|...|.||
BPUM_2951 436 GCACTTTCTCCTTATGTATCCTCCAAGTTTGCTTTAGAGGGCTACACAGA 485
BSNT_04908 342 AAGCCTGCGTATCGAGC-TGCTTCCGTTCGGTATCGAAACCGCTTTGATC 390
.|||.|.||.||.||.| |||.| ||||||||||..|..|.||.||||||
BPUM_2951 486 GAGCTTACGCATTGAACTTGCCT-CGTTCGGTATACAGGCAGCCTTGATC 534
BSNT_04908 391 GAGCCGGGCTCATACAAGAC--ATCGATCTGGTCAACGTCATTAT----- 433
||.||.|||||.|.|.|.|| || ||.|||...||||| |||
BPUM_2951 535 GAACCAGGCTCTTTCCAAACGAAT--ATTTGGAACACGTC--TATGAACG 580
BSNT_04908 434 --CAAATTTTATGTCGGTGCCTGCTGACGATTCAGCCT-ATCATCAATA- 479
||.||.||| |...|.||.|| ||.|| |..||..|||
BPUM_2951 581 AGCACATGTTA--------CAACCAGAAGA---AGGCTCAAAATACATAC 619
BSNT_04908 480 ----CTATAAAAAGA-------TCCTTTCCTATGTTCAAAAAACCGGAGA 518
||||.|||||| ||.|.| |.|||.|||||||.|
BPUM_2951 620 ACCTCTATCAAAAGATGATGGCTCATAT-CAATGCTCAAAAATC------ 662
BSNT_04908 519 AGAAA--GCGGAGATCCCCAAGAGGTTGCCGACCTCATTTATCAATT-GG 565
||| .|||.||.||.|..||.||.||.||.||..|...||.||| |.
BPUM_2951 663 --AAACTACGGGGACCCGCGTGAAGTCGCAGAGCTTGTGATTCGATTAGC 710
BSNT_04908 566 CAACAAAACAGCACATAAAGAAATTGCGATACCCGA-TCGGAAAGGGCAT 614
|.|.||.| |||...|.||.||..||.||||.||.| |.|||||||
BPUM_2951 711 CGAGAAGA-AGCGGCTGAAAAAGCTGAGATATCCAATTGGGAAAGG---- 755
BSNT_04908 615 CAAGCTCACCCTGC--------TATTCCG---ATC-GCTTTTTCCTTGGT 652
|| ||| |.|.||| |.| |||.||.||||||
BPUM_2951 756 --AG-------TGCGACTTTCATTTACCGCAAAGCAGCTCTTACCTTGG- 795
BSNT_04908 653 CTGC--GTGGGAGTCTATCCTGAAGAAAAA---------------GCTAT 685
.|| |||||| ||||| .||.|
BPUM_2951 796 -AGCATGTGGGA-------------AAAAATCATATTACGTACACTCTCT 831
BSNT_04908 686 TCAAATAA---- 693
|||||.||
BPUM_2951 832 TCAAAAAAATAA 843
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