Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04911 and BPUM_2952
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence dna-align/BSNT_04911___yvtA.1.24716.seq
# -bsequence dna-align/BPUM_2952.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04911___yvtA-BPUM_2952.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04911___yvtA-BPUM_2952.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04911___yvtA
# 2: BPUM_2952
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1473
# Identity: 978/1473 (66.4%)
# Similarity: 978/1473 (66.4%)
# Gaps: 198/1473 (13.4%)
# Score: 3109.0
#
#
#=======================================
BSNT_04911___ 1 ATGGATTATCGACGTG---------------------ATGGCCAAAACGA 29
|||||||.||||.|.| ||...|||.|.||
BPUM_2952 1 ATGGATTTTCGAAGAGAAGATGAAGAGAAGAAGTTGAATCAACAAGAAGA 50
BSNT_04911___ 30 TCAACATCAA---ACTG---AACCTTCACATACA-GAACAGCAGAATACA 72
|..||||||| |.|| || ||.|||.| |||| |.||| |.|
BPUM_2952 51 TGTACATCAAGAGAATGAGAAA----CAAATAGACGAAC--CTGAA-AAA 93
BSNT_04911___ 73 GAAAACCAGAAGCT-GATTGGACATTC-------TGAACAAGAATTGCTT 114
|||| ||.|.|| |.|| ||| ||||.|.||| ||||
BPUM_2952 94 GAAA---AGGAACTCGTTT-----TTCAACCTCATGAAAACGAA--GCTT 133
BSNT_04911___ 115 GACGTGCCTGTGTCTTATGA-AGCGGGACGGCAGGAAACGGC-TTCTGCA 162
|||...||.|.|| ||.|.||| |||| | ||||.|.
BPUM_2952 134 -------CTGCCACTCAGGAGAGTGTGAC------AAAC--CATTCTCCT 168
BSNT_04911___ 163 CTAGAAATGGAAAAGCAAGAAACGGCTGT-----GAAAAAAGAAAAGAAA 207
| |||||| ||.|.|.|.|| ||||||.||.||.||.
BPUM_2952 169 C---AAATGG--------GAGATGACCGTGCGTCGAAAAAGGAGAAAAAG 207
BSNT_04911___ 208 CGGAGAGCCGCATGGCTGAGCCCGATTTTAGGCGGTATTATCGGCGGGGG 257
||||.|||.||||||||.||.|||||..|.||.||.|||||.|||||.||
BPUM_2952 208 CGGAAAGCAGCATGGCTCAGTCCGATCCTTGGAGGAATTATTGGCGGAGG 257
BSNT_04911___ 258 CCTCATGCTTGGCAT----CGCGCCTTATCTGCCGTCA---GAC------ 294
|||..|||||||||| | |||.||..|.||.|||| |||
BPUM_2952 258 CCTTGTGCTTGGCATTACAC-CGCTTTTGCCGCAGTCACAGGACACTGCC 306
BSNT_04911___ 295 -CAA--AATCAGGCGACCG-AGACCGCTTCCGCAAATAAACAGGTGCAGT 340
||| ||||| |.|| |.||.||.| |||.|.|||.||.|...|
BPUM_2952 307 GCAAATAATCA----AACGCAAACAGCGT---CAAGTGAACCGGCGACCT 349
BSNT_04911___ 341 CTGATAATTTTACAACGGCGCCGATAACGAACGCATCAAACATCGCTGAT 390
||||.|||||..||||....|..||.||.||.||..|.||..||.|||||
BPUM_2952 350 CTGAGAATTTCTCAACAAAACAAATCACCAATGCCACGAATGTCTCTGAT 399
BSNT_04911___ 391 ATGGTAGAGGATTTAGAGCCTACGATTGTCGGAATCTCAAA-TATCCAAA 439
||||||||.|||||||||||.||.|||||.||..||||||| ||| ||||
BPUM_2952 400 ATGGTAGAAGATTTAGAGCCAACCATTGTGGGTGTCTCAAACTAT-CAAA 448
BSNT_04911___ 440 CCTCTCAAAATAACACATTCGGCACAGGAGGAGGCTCCAGCTCAGAA--A 487
|..|||||||| .|.||.|||....|.||.|..||.| ||||| |
BPUM_2952 449 CTACTCAAAAT---TCGTTTGGCCTTAGCGGCGATTCTA---CAGAAGCA 492
BSNT_04911___ 488 GTGAAAGC-GGAACCGGGTCAGGTGTTATTTTCAAAAAAGACAGCAATAA 536
| |||| |||||.||.||.|||||.||.||.||||||||..||||.||
BPUM_2952 493 G---AAGCTGGAACGGGTTCTGGTGTCATCTTTAAAAAAGATGGCAAAAA 539
BSNT_04911___ 537 AGCGTATATCATTACAAACAACCATGTCGTTGAAGGCGCGAACAAGCTGA 586
|||.||.||.||||||||.|||||.||.||.||.||.||.||.||.||||
BPUM_2952 540 AGCATACATTATTACAAATAACCACGTAGTCGAGGGTGCCAATAAACTGA 589
BSNT_04911___ 587 CTGTTACGCTATACAACGGAGAAACGGAAACTGCCAAGCTTGTCGGCAGC 636
..||.||.||.||..|||||.||||..||..|||.||||||||||||||.
BPUM_2952 590 AGGTCACACTGTATGACGGAAAAACAAAAGATGCGAAGCTTGTCGGCAGT 639
BSNT_04911___ 637 GATACCATTACTGATTTGGCAGTTTTGGAAATCA--GCAGCAAGAACGTC 684
||....||.||.|||||.||.|||.|.||||||| |||| |.|.|
BPUM_2952 640 GACGTGATGACAGATTTAGCTGTTGTAGAAATCAATGCAG-----ATGGC 684
BSNT_04911___ 685 A---AAAAAGTGGCGAGCTTTGGTGATTCTTCACAGCTGCGCACTGGCGA 731
| |.||||||||||||||||||||||||||..||||.||..||||.||
BPUM_2952 685 ATTGATAAAGTGGCGAGCTTTGGTGATTCTTCTAAGCTCCGTGCTGGAGA 734
BSNT_04911___ 732 AAAGGTAATCGCTATCGGTAACCCGCTCGGACAGCAGTTTTCCGGTACGG 781
.||.||||||||.||.||.||||||||.||....||.||.||.|||||.|
BPUM_2952 735 CAAAGTAATCGCAATTGGGAACCCGCTTGGTGCCCAATTCTCTGGTACTG 784
BSNT_04911___ 782 TGACACAAGGCATCATTAGCGGACTGAACCGGACAATTGATGTGGATACA 831
|||||.||||.||.||.||.||.||..|.||.|||.||||.|.|.|.||.
BPUM_2952 785 TGACAGAAGGAATTATCAGTGGTCTTGATCGTACAGTTGAAGCGAACACG 834
BSNT_04911___ 832 ACACAAGGGACGGTGGAAATGAACGTGCTGCAAACTGATGCAGCGATCAA 881
.||...||.||||||||||||||.||.||||||||.||||||||||||||
BPUM_2952 835 TCATCTGGTACGGTGGAAATGAATGTACTGCAAACAGATGCAGCGATCAA 884
BSNT_04911___ 882 TCCGGGGAACAGCGGAGGCCCATTAATCAATGCAAGCGGCCAGGTCATCG 931
|||.||.||||||||.||.||..|.||||||.||...||.||.|||||||
BPUM_2952 885 TCCAGGAAACAGCGGTGGACCGCTTATCAATACAGATGGTCAAGTCATCG 934
BSNT_04911___ 932 GCATCAACAGCTTGAAGGTGAGCGAAAACGGCGTGGAATCACTTGGATTT 981
|.||||||||||||||..|.|||||||.|||.|||||||||||.||.|||
BPUM_2952 935 GTATCAACAGCTTGAAAATTAGCGAAAGCGGTGTGGAATCACTCGGCTTT 984
BSNT_04911___ 982 GCGATCCCAAGCAATGATGTCGAGCCGATTGTTGACCAGCTGCTGCAAAA 1031
|||||.|||||.||.||||||.|.||||||||.||..|||||.||.||||
BPUM_2952 985 GCGATTCCAAGTAACGATGTCAAACCGATTGTAGATGAGCTGTTGAAAAA 1034
BSNT_04911___ 1032 CGGGAAGGTGGACCGTCCGTTTTTA----GGCGTGCAGATGATTGACATG 1077
|||.|||||.||.||||| ||| |||||.||.|||||||||.|
BPUM_2952 1035 CGGAAAGGTTGAACGTCC----TTACCTTGGCGTACAAATGATTGACCT- 1079
BSNT_04911___ 1078 TCA-CAAGTTCCTGAAACCTATCAGGAAAATACGCTCGGCCTGTTTGGAG 1126
|.| |||||.||||||||.|||||.|||||||||||.|||||.||||...
BPUM_2952 1080 TGAGCAAGTGCCTGAAACGTATCAAGAAAATACGCTTGGCCTATTTGATA 1129
BSNT_04911___ 1127 ATCAATTGGGCAAAGGTGTTTATGTAAAAGAAGTTCAAGCAAA---TTCG 1173
|.|||.|.||||||||..||||.|||||.||.|| |.|||| .||.
BPUM_2952 1130 AACAAATCGGCAAAGGGATTTACGTAAAGGATGT---ATCAAAAGGATCA 1176
BSNT_04911___ 1174 CCGGCAGAAAAAGCAGGTATTAAATCTGAGGATGTCATTGTCAAACTAAA 1223
||.|||.||||||||||..|.||.||||..||||||||..||||..|.||
BPUM_2952 1177 CCTGCACAAAAAGCAGGCTTGAAGTCTGGAGATGTCATCATCAAGTTTAA 1226
BSNT_04911___ 1224 CGGTAAAGACGTGGAAAGCAGTGCGGATATCCGTCAG---------ATCC 1264
.||.|||.||||| |||.|.|.|..|||| ||..
BPUM_2952 1227 AGGGAAAAACGTG---------GCGAACAGCTCTCAGCTAAAAGAAATTT 1267
BSNT_04911___ 1265 TTTACAAAGACTTAAAAGTCGGAGATAAAACAACAATCCAAGTGCTGCG- 1313
|.||||||||...||||||.||.||||||||||||||....||..|.||
BPUM_2952 1268 TGTACAAAGAAACAAAAGTTGGCGATAAAACAACAATGACTGTTATTCGT 1317
BSNT_04911___ 1314 AAAGGGAAAAACGAAAACGTTGA----ACGC---GACA--CTGACCAAGC 1354
.|||||||||||.|.|||.|.|| ||.| |||| |||
BPUM_2952 1318 GAAGGGAAAAACAAGAACTTAGATATTACTCTTGGACAGTCTG------- 1360
BSNT_04911___ 1355 AGACAGAAAGCAGTTCAAGCTAA 1377
|.||.||| |||
BPUM_2952 1361 AAACTGAA------------TAA 1371
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