Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04914 and BPUM_2953

See Amino acid alignment / Visit BSNT_04914 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:38
# Commandline: needle
#    -asequence dna-align/BSNT_04914___cssR.1.24716.seq
#    -bsequence dna-align/BPUM_2953___cssR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04914___cssR-BPUM_2953___cssR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04914___cssR-BPUM_2953___cssR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04914___cssR
# 2: BPUM_2953___cssR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity:     498/707 (70.4%)
# Similarity:   498/707 (70.4%)
# Gaps:          58/707 ( 8.2%)
# Score: 1676.5
# 
#
#=======================================

BSNT_04914___      1 TTGTCATACACCATTTATCTAGTTGAAGATGAGGATAACCTGAATGAACT     50
                     |||||.||||||||||||.||||.||||||||..|.|||.|.||.|||||
BPUM_2953___c      1 TTGTCGTACACCATTTATTTAGTGGAAGATGAACAAAACTTAAACGAACT     50

BSNT_04914___     51 GCTGACGAAGTATTTAGAGAATGAGGGCTGGAACATTACATCTTTT---A     97
                     ..|.||.||.||||||||.|.|||....|||||..||.|.||||||   |
BPUM_2953___c     51 TTTAACCAAATATTTAGAAAGTGAAAATTGGAATGTTTCCTCTTTTTTAA    100

BSNT_04914___     98 C----GAAA-GGTGAAGACGCCAGAAAGAA--AATG-ACA--CCGTCTCC    137
                     |    |||| ||    .||||      |||  |||| |||  |||   ||
BPUM_2953___c    101 CCGGAGAAACGG----CACGC------GAAGCAATGAACAAGCCG---CC    137

BSNT_04914___    138 CCACCTATGGATTCTTGATATCATGCTGCCGGATACCGACGGCTATACAT    187
                     .||.|||||||||.|.||||||||||||||.|||||.||.|||||.|||.
BPUM_2953___c    138 GCATCTATGGATTTTAGATATCATGCTGCCTGATACTGATGGCTACACAC    187

BSNT_04914___    188 TAATAAAAGAAA-TCAAGGCGAAAGATCCTGACGTGCCGGTCATTTTTAT    236
                     |.||.||||||| |.|||.||.|..| ||||||||.|||||||||||.||
BPUM_2953___c    188 TCATTAAAGAAATTAAAGCCGCATCA-CCTGACGTACCGGTCATTTTCAT    236

BSNT_04914___    237 TTCCGCCCGAGATGCGGATATTGACAGAGTGCTTGGCTTAGAGCTTGGCA    286
                     |||.||.||.|||||.|||||.||..|.||.|||||.||||||||.||.|
BPUM_2953___c    237 TTCAGCACGCGATGCAGATATCGATCGTGTCCTTGGGTTAGAGCTGGGAA    286

BSNT_04914___    287 GCAATGACTACATTTCAAAGCCGTTTCTGCCGCGGGAGCTGATTATCCGT    336
                     |||.|||.||.|||.|.|||||.|||||.||.||.||||||||.||.||.
BPUM_2953___c    287 GCAGTGATTATATTGCGAAGCCATTTCTTCCACGCGAGCTGATCATTCGG    336

BSNT_04914___    337 GTGCAAAAGCTGCTGCAGCTCGTATATAAGGA-AGC--TCCTCCTGTCCA    383
                     ||||||||||||||..||||.|||||.||..| |||  |.|.||....||
BPUM_2953___c    337 GTGCAAAAGCTGCTTGAGCTTGTATACAAAAACAGCGATACACCGCAGCA    386

BSNT_04914___    384 AAAAAATGAAATTGCCGTCTCCTCGTATCGGGTC---------GCTG-AA    423
                     ..|||.||..|...||||||||||.|||   |||         |.|| ||
BPUM_2953___c    387 GCAAAGTGTCACACCCGTCTCCTCCTAT---GTCATTCATGAGGATGTAA    433

BSNT_04914___    424 GACGCCCGCGAGGTCTATGACGAAAACGGGA--ATATTATCAATTTGACG    471
                     ||       |||||.||||     ||.|.||  |..|.||.|||||.||.
BPUM_2953___c    434 GA-------GAGGTGTATG-----AAGGAGATCAGCTCATTAATTTAACT    471

BSNT_04914___    472 TCAAAGGAATTTGATCTGCTGCTATTATTTATCCATCATAAAGGGCATCC    521
                     ||.|||||||||||..|||||||.|||||||..||.||..||||.|||.|
BPUM_2953___c    472 TCTAAGGAATTTGACTTGCTGCTTTTATTTACACACCACCAAGGACATGC    521

BSNT_04914___    522 GTACTCTCGTGAGGATATCCTCCTAAAAGTGTGGGGGCATGACTACTTCG    571
                     .|..||||||||.|||||.|||.|.|||.|.|||||.||.||.|||||||
BPUM_2953___c    522 TTTTTCTCGTGAAGATATTCTCGTCAAAATTTGGGGACACGATTACTTCG    571

BSNT_04914___    572 GAACAGACCGGGTCGTTGATGATCTCGTCCGGAGACTGCGCAGAAAGATG    621
                     |.|||||.||.||.||.|||||.||.|||.|..||.||||||.|||.|||
BPUM_2953___c    572 GGACAGATCGTGTGGTGGATGACCTTGTCAGACGATTGCGCAAAAAAATG    621

BSNT_04914___    622 CCTGAATTGAAGGTGGAGACGATTTACGGTTTCGGCTACAGGTTGATGTC    671
                     ||.||.||.|||||.|||||.||.||.||.||.|||||.|||.||.|...
BPUM_2953___c    622 CCCGACTTAAAGGTCGAGACCATCTATGGATTTGGCTATAGGATGCTAAA    671

BSNT_04914___    672 ATCATGA    678
                     |..||||
BPUM_2953___c    672 AGGATGA    678


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