Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04915 and BPUM_2954
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence dna-align/BSNT_04915___cssS.1.24716.seq
# -bsequence dna-align/BPUM_2954___cssS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04915___cssS-BPUM_2954___cssS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04915___cssS-BPUM_2954___cssS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04915___cssS
# 2: BPUM_2954___cssS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1437
# Identity: 943/1437 (65.6%)
# Similarity: 943/1437 (65.6%)
# Gaps: 186/1437 (12.9%)
# Score: 2957.5
#
#
#=======================================
BSNT_04915___ 1 ATGAAAAACAAGCCGCTCGCGTTTCAGATATGGGTTGTCATATCCGGCAT 50
|||||.|||||.||.|||||.|||||.||.|||.|.|||||.||.||.||
BPUM_2954___c 1 ATGAAGAACAAACCACTCGCTTTTCAAATTTGGATCGTCATCTCTGGTAT 50
BSNT_04915___ 51 CCTGTTAGCGATATCGATTTTACTGCTTGTGTTATTTTCAAACACGCTGC 100
..||.|..|.||.||||||.|.|||.|..|.||||||||.||.||..|.|
BPUM_2954___c 51 TTTGCTCACCATCTCGATTGTCCTGATCATCTTATTTTCGAATACATTAC 100
BSNT_04915___ 101 GAGATTTTTTCACTAATGAAACGTATACGACGATTGAAAATGAGCAGCAT 150
||.|.||||||||.|||||||..||||..|..||.|||||.||.||.||.
BPUM_2954___c 101 GAAACTTTTTCACGAATGAAATTTATAAAAATATCGAAAACGAACAACAG 150
BSNT_04915___ 151 GTTCTGACAGAGTACCGCCTGCCAGGTTCGATTGAAAGGCGCTATTACAG 200
||.||.|||||.|| ||.||||| |.
BPUM_2954___c 151 GTGCTCACAGAATA-------------TCCATTGA-------------AC 174
BSNT_04915___ 201 CGAGGAAGCGACGGC--------GCCGACAACTG---TCCGCTCCGTACA 239
||| |||||| |.|||||.|.| .|||.||.||.||
BPUM_2954___c 175 CGA------GACGGCTCGCCAAAGTCGACACCGGAAAACCGATCGGTGCA 218
BSNT_04915___ 240 GCACGTGCTCCTTCC------TGA---AAATGAAGAGGC-----TTCTTC 275
||||.|.||..|||| ||| |||..||..||| ||.|||
BPUM_2954___c 219 GCACATTCTGATTCCGTCAGATGAATTAAACCAAATGGCGCAATTTTTTC 268
BSNT_04915___ 276 AGACAAGGATTTA---AGCATTCTGTCATC--TTCATTTATCCACAAGGT 320
.| ||.|..|||| ||.| .||| .||.|||.|..|.||
BPUM_2954___c 269 CG-CACGCTTTTATTGAGAA------AATCCAATCCTTTGTGAAAAA--- 308
BSNT_04915___ 321 GTACAAGCTGGCTGATCAGCAGGAAGCTAAAAAGAAACGTTACAGCGCCG 370
|||| |..||| || ||.||||||.||....|..|
BPUM_2954___c 309 --ACAA--------AAAAGC-----GC---AACGAAACGCTATTCTGAAG 340
BSNT_04915___ 371 ACGTCAATGGAGAGAAAGTGTTTTTTGTCATTAAAAAGGGACTTTCCGTC 420
|.||.||.||..||.|..|.|||||||||||.|||||.|.|....|.|.|
BPUM_2954___c 341 AGGTGAACGGCCAGCACATCTTTTTTGTCATCAAAAAAGTATCAACAGGC 390
BSNT_04915___ 421 AATGGACAATCAGCGATGATGCTCTCTTACGCGCTTGATTCTTATCGGGA 470
|||..||||| ..||..||.|.|||||.||||..|||||||||||.||
BPUM_2954___c 391 AATACACAAT---ATATTCTGTTGTCTTATGCGCCAGATTCTTATCGAGA 437
BSNT_04915___ 471 CGATTTGGCCTATACCTTATTCAAACAGCTTCTGTTTAT-TATAGCTGTC 519
|||..||.|.|.|||..|.||.||||||||..|.||||| |..||| ..|
BPUM_2954___c 438 CGACCTGTCTTTTACACTGTTTAAACAGCTGATCTTTATCTTGAGC-ACC 486
BSNT_04915___ 520 GTCATTTTATTAAGCTGGATTCCGGCTATTTGGCTTGCAAAGTATTTATC 569
||.||||||||||||||||||||..|.|||||||||||....||||||||
BPUM_2954___c 487 GTTATTTTATTAAGCTGGATTCCATCGATTTGGCTTGCCCGCTATTTATC 536
BSNT_04915___ 570 AAGGCCTCTTGTATCATTTGAAAAACACGTCAAACGGATTTCTGAACAGG 619
..|.||..|.||..|.||||||||.|||||.||.||||||.|..||.|||
BPUM_2954___c 537 CCGTCCAATCGTTGCGTTTGAAAAGCACGTGAAGCGGATTGCACAAGAGG 586
BSNT_04915___ 620 ATTGGGATGACCCAGTAAAAGTGGACCGGAAAGATGAAATCGGAAAATTG 669
|.|||||.||.||.||.|..||.||||||.||||||||||||||||..|.
BPUM_2954___c 587 ACTGGGACGATCCTGTCATCGTTGACCGGCAAGATGAAATCGGAAAGCTT 636
BSNT_04915___ 670 GGCCATACCATCGAAGAGATGCGCCAAAAGCTTGTGCAAAAGGATGAAAC 719
||.||||||||.|||||.|||.|.|||||.||..|.||||||||||||||
BPUM_2954___c 637 GGTCATACCATTGAAGAAATGAGACAAAAACTCATTCAAAAGGATGAAAC 686
BSNT_04915___ 720 AGAAAGAACTCTATTGCAAAATATCTCTCATGATTTAAAAACGCCGGTCA 769
||||.|.|||||.||||||||||||||.|||||.|||||.||.||.||||
BPUM_2954___c 687 AGAACGGACTCTTTTGCAAAATATCTCACATGACTTAAAGACACCTGTCA 736
BSNT_04915___ 770 TGGTCATCAGAGGCTATACACAATCAATTAAAGACGGGATTTTTCCTAAA 819
||||||||.|.||||||||.||.||.||||||||.||.|||||||||||.
BPUM_2954___c 737 TGGTCATCCGCGGCTATACGCAGTCGATTAAAGATGGTATTTTTCCTAAG 786
BSNT_04915___ 820 GGAGACCTTGAAAACACTGTAGATGTTATTGAATGCGAAGCTCTTAAGCT 869
|||||.||||||.|.||.||.||.||.||||||.|.|||||....|||||
BPUM_2954___c 787 GGAGATCTTGAACAAACGGTGGAAGTCATTGAAGGTGAAGCGGAAAAGCT 836
BSNT_04915___ 870 GGAGAAAAAAATAAAGGATTTATTATATTTAACGAAGCTGGATTATTTAG 919
.|||||.|||||.||||||||..|.||.|||||.|||||.|||||||||.
BPUM_2954___c 837 TGAGAAGAAAATCAAGGATTTGCTGTACTTAACAAAGCTTGATTATTTAT 886
BSNT_04915___ 920 CGAAGCAA-AAAGTGCAGCA------CGACATGTTCAGT------ATTGT 956
|.||.||| |...|||| || |..|.||.||||| ||..|
BPUM_2954___c 887 CAAATCAACACCCTGCA-CATGCTTCCTTCCTGCTCAGTAATACGATGCT 935
BSNT_04915___ 957 AGAAGT----GACAGAAGAAG-TCATCGAA----CGATTGAAGTGGGCGC 997
.||||| |||.|||.|.| |..||||| ..||||.|||||
BPUM_2954___c 936 GGAAGTGGTCGACCGAATACGTTGGTCGAAAAATGAATTGCAGTGG---- 981
BSNT_04915___ 998 GGAAAGAACTATCGTGGGAAATT-GATGTAGAAGAGGAT-ATTTTGATGC 1045
|.||||| |.|| ||| ||.||||.| .|.||||
BPUM_2954___c 982 ----------AACGTGG--ACTTAGAT---GATGAGGCTGCTCTTGA--- 1013
BSNT_04915___ 1046 CGGGCGATCCGGAGCAATGGAACAAACTCCTCGAAAACATTCTGGAAAAT 1095
.||||||||.||.|||||||.||||||..|.||.||..|.||.||||||
BPUM_2954___c 1014 -AGGCGATCCAGAACAATGGAGCAAACTATTTGAGAATGTACTAGAAAAT 1062
BSNT_04915___ 1096 CAAATCCGCTATGCTGAGACAAAAATAGA-AATCAGCATGAAAC---AAG 1141
|||.|.|||||.||..|.|..|||||.|| |.||| .||||||| |||
BPUM_2954___c 1063 CAACTTCGCTACGCAAAAAGTAAAATTGACATTCA-AATGAAACAGGAAG 1111
BSNT_04915___ 1142 ATGATCGAAAT----ATCGTGATCACCATTAAAAATGACGGTCCGCATAT 1187
|.|||| |||| ||.|| ||||...|||||||||||.|..||
BPUM_2954___c 1112 AGGATC-AAATACGCATTGT------CATTCGTAATGACGGTCCTCCAAT 1154
BSNT_04915___ 1188 TGAAGATGAGATGCTCTCCAGCCTCTATGAGCCTTTTAATAAAGGGAAGA 1237
||||||..|.|||||.||||.|||.|||||.|||||||.| |||||||.|
BPUM_2954___c 1155 TGAAGAACATATGCTATCCAACCTATATGAACCTTTTAGT-AAGGGAAAA 1203
BSNT_04915___ 1238 AA-GGCGAATTCGGCATTGGTCTAAGCATCGTAAAACGAATTTTAACTC- 1285
|| ||.||||||||.||.||..|||||||.||.|||..||||.| |||
BPUM_2954___c 1204 AAGGGTGAATTCGGTATCGGATTAAGCATTGTCAAAAAAATTCT--CTCC 1251
BSNT_04915___ 1286 -TTCATAAGGCATCTATCTCAATTGAAAATGA----CAAAACGGGTGTA- 1329
|.|||.|.||.|||||.||.||||||||||| |.| ||||||
BPUM_2954___c 1252 ATGCATCAAGCGTCTATATCTATTGAAAATGATGATCTA----GGTGTAT 1297
BSNT_04915___ 1330 -ACATACCGCATAGCAGTGCCAAAATAG--------- 1356
..|||| .||..|.||.|||||..||
BPUM_2954___c 1298 GTTATAC--GATCACGGTTCCAAAGAAGAGACTGTAG 1332
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