Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02097 and BPUM_2986
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_02097___exuR.1.24716.seq
# -bsequence dna-align/BPUM_2986.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02097___exuR-BPUM_2986.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02097___exuR-BPUM_2986.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02097___exuR
# 2: BPUM_2986
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1090
# Identity: 692/1090 (63.5%)
# Similarity: 692/1090 (63.5%)
# Gaps: 167/1090 (15.3%)
# Score: 2008.5
#
#
#=======================================
BSNT_02097___ 1 ATG---GTAACCATAAAAGATATCGCAAAACTCGCAAACGTATCCCACAC 47
||| ||.||.||.|||||.||.||||||.|.|||||.||.||.||.||
BPUM_2986 1 ATGACAGTCACAATTAAAGACATAGCAAAATTGGCAAATGTCTCTCATAC 50
BSNT_02097___ 48 AACCGTTTCCAGAGCACTCAACAACAGCCCTTACATCAAAGAACATACGA 97
.||.||.||.||.||..|.||.||.||.||||..||.|||||..|.||.|
BPUM_2986 51 CACAGTATCAAGGGCTTTGAATAATAGTCCTTTTATTAAAGAGAAGACAA 100
BSNT_02097___ 98 AGAAAAAGATATTAGAGCTAGCAGAGCAGCTCAACTATACACCAAATGTA 147
|..|||||||.||...|.|.|||.|.|||||.||||||.||||||||||.
BPUM_2986 101 AACAAAAGATTTTGTCGATTGCAAAACAGCTGAACTATTCACCAAATGTC 150
BSNT_02097___ 148 AATGCGAAAAGTCTGGCGATG-----CAAAAGTCGCATACGATCGGGCTA 192
.||||.|.| |||..|| |||||.||...|||||||||.||.
BPUM_2986 151 CATGCCAGA-----GGCCTTGTATCACAAAAATCTTTTACGATCGGTCTG 195
BSNT_02097___ 193 TTCTTTACAAGCATTACAAACGG---AACCTCACACAGCTTCTTTGCAGA 239
||.|||||.||..|.|||.|.|| |.||||| ||||||||||..||
BPUM_2986 196 TTTTTTACGAGTTTAACAGAAGGCACATCCTCA---AGCTTCTTTGTGGA 242
BSNT_02097___ 240 CACAATCAAAGGCGTCAATCAAGC--CATAAGTGAGGATTACAATCTGTA 287
..|..|.|||||||||||| ||| |||.|..|||.||||||||||||.
BPUM_2986 243 TGCGTTAAAAGGCGTCAAT--AGCGTCATGACAGAGCATTACAATCTGTT 290
BSNT_02097___ 288 TGTGCGCGGCATTGATGATCTGAAAAACT-ATGACTCCGTTACAC--CGA 334
|||..|.||.|||||.|||.| | |||| |||||| |.|
BPUM_2986 291 TGTTAGGGGTATTGACGATTT-------TCATGA-----TTACACAACCA 328
BSNT_02097___ 335 T---------GAGATATGACGGCATCATTT--TAATGAGCCAAAGTG-AC 372
| |.|.||.||.||.|| ||| |.||||||||||||| ||
BPUM_2986 329 TTCATAAACAGCGCTACGATGGTAT--TTTGCTGATGAGCCAAAGTGAAC 376
BSNT_02097___ 373 ATTGATAATTCTTTTATTTACCAT-AT-TCGCGAAAAAAA-----CATTC 415
| ||||.|..|.||||| |||| || || ||.||| |||||
BPUM_2986 377 A-TGATGAAGCGTTTAT---CCATCATGTC----AAGAAACAGGGCATTC 418
BSNT_02097___ 416 CGCTTGTCGTGCTGAATCG------TGATATTGATGATCGCACCA-TCAC 458
|..|..|.||||||||||| .||.|.|.|||| | |.|.
BPUM_2986 419 CAATCATTGTGCTGAATCGCCGTGTAGAAAGTCATGA-------AGTGAT 461
BSNT_02097___ 459 GAATATTTTGTCCAATGA----CAAGGAAGGC-TCTCAAGAAGCTGTAG- 502
||||||.||..|..|||| |||||| || |..||.|.||| |
BPUM_2986 462 GAATATATTAGCAGATGATAGTCAAGGA--GCATACCAGGCAGC----GC 505
BSNT_02097___ 503 AATACTTCATTCAGTCCGGCCATCAAGACATCGCCATCATCGAGGGGATC 552
|.||.|||||||||...|||||.|||.|.|||||||||||.||.||.|..
BPUM_2986 506 ACTATTTCATTCAGCAAGGCCACCAACAAATCGCCATCATTGAAGGAAAA 555
BSNT_02097___ 553 GAAGGCTTTAAATCCTCCCAGCAGCGAAAGGAAGGCTACTTATCT----G 598
||||||||||||||..|.||| ||.||.||.|||..||.||| |
BPUM_2986 556 GAAGGCTTTAAATCGACTCAG----GAGAGAAAAGCTGGTTTTCTTCAAG 601
BSNT_02097___ 599 CACTGATTCAACATCATATTCCGATCAAGCATGAATACAGTG-TCAAAGG 647
|..|.|||.|.||.|||||||||||.||..|.|||||.| || ||||.||
BPUM_2986 602 CGTTAATTGATCACCATATTCCGATGAAAAAAGAATATA-TGATCAAGGG 650
BSNT_02097___ 648 ACAGTACGATATGGAAAGCGGCTTTCAAGCGATGGAGAGGCTGCTGGCAC 697
..|.|||.|||||.|||||||||.|.||.|.|||||....||||||.|.|
BPUM_2986 651 TGACTACCATATGAAAAGCGGCTATGAATCAATGGAATCCCTGCTGACCC 700
BSNT_02097___ 698 TGCCGA--ATCCTCCAACCGCTGTTTTTTGTTCGAATGATGACATGGCAA 745
| .|| ||||.|||||.|||.|||||||.||.||.|||||.|||||.|
BPUM_2986 701 T--TGATCATCCGCCAACAGCTCTTTTTTGCTCTAACGATGATATGGCCA 748
BSNT_02097___ 746 TCGGAGCGATGAATGCGATATTCGCAAAGGG-----CCTGCGCGTTCCTG 790
|.||.||.||||||||..|||..|||||||| |.|| |||.|
BPUM_2986 749 TTGGTGCAATGAATGCTTTATATGCAAAGGGTAAGACGTG-----TCCGG 793
BSNT_02097___ 791 ATGATATTTCGGTGATCGGGTTTGATGATATTGGGTTTTCACAGTACATC 840
..|||.|.||..|.|||||.|||||||||||||..||||||...||.|.|
BPUM_2986 794 GCGATGTCTCTATTATCGGTTTTGATGATATTGCATTTTCATCCTATACC 843
BSNT_02097___ 841 ACGCCAAGACTTACAACAGT---AAAGCGCCCAGTGGAGAAAATCAGCGT 887
|||||...|||.|||||.|| |||| |||.|.||.||||| |.||
BPUM_2986 844 ACGCCTGCACTGACAACGGTTAAAAAG---CCAATCGAAAAAAT--GTGT 888
BSNT_02097___ 888 GCTCGGTGCGCAAAAACTCTTGTCTCTGATCAGCGAGCCCGAAAC----A 933
||.|...|.|||.|..|..||.|.|||| ||| .|||| |
BPUM_2986 889 GCACTTGGAGCAGATGCCATTCTATCTG-TCA--------TAAACGGAGA 929
BSNT_02097___ 934 AAAGCAGAAAAA--ATC--TTGGAAA------------ACACAAAATTCA 967
|.|||||.||.| ||| .|||||| |.|||.|..|||
BPUM_2986 930 AGAGCAGGAAGAGGATCATATGGAAAAAATGTATGTCCATACAGAGCTCA 979
BSNT_02097___ 968 TGGTGCGTGATTCAGTCAGACGATTGACGACGTGA----- 1002
||.|..|.|||||||||| |..|.|||.
BPUM_2986 980 TGATCAGAGATTCAGTCA--------AAAAGGTGCAGTAA 1011
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