Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04948 and BPUM_2989

See Amino acid alignment / Visit BSNT_04948 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:41
# Commandline: needle
#    -asequence dna-align/BSNT_04948.1.24716.seq
#    -bsequence dna-align/BPUM_2989.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04948-BPUM_2989.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04948-BPUM_2989.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04948
# 2: BPUM_2989
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 804
# Identity:     485/804 (60.3%)
# Similarity:   485/804 (60.3%)
# Gaps:         138/804 (17.2%)
# Score: 1422.5
# 
#
#=======================================

BSNT_04948         1 ATGAAAAAAACAGTGACAGAAAGGAACATAAAAGTGGAAAATGCGTCAAT     50
                                                      |||||||..||...|||
BPUM_2989          1 ---------------------------------GTGGAAACAGCAAAAAT     17

BSNT_04948        51 TTTAATCGTAGACGATGAGAAAGCGATTGTGGACATGATCAAACGCGTTC    100
                     .||.||.|.|||.||.||..||||.|||||..|.|||.|..|||||||..
BPUM_2989         18 ATTGATTGCAGATGACGAAGAAGCAATTGTCAAAATGGTTGAACGCGTAT     67

BSNT_04948       101 TCGAAAAAGAAGGTT------ATCGAAATATACTGGATGCAGCAAGC---    141
                     |..||||||||||.|      ||  |.|||||           ||||   
BPUM_2989         68 TAAAAAAAGAAGGATTCAAGCAT--ATATATA-----------AAGCTTA    104

BSNT_04948       142 ----GCAGAAGAAGC----GATTCCCGTTGTGAAGGCCAATAAGGTTGA-    182
                         |||||.|||||    |||    |||||      |||.||.|..|| 
BPUM_2989        105 CCATGCAGATGAAGCATTAGAT----GTTGT------CAAAAACGAGGAC    144

BSNT_04948       183 --------CTTGATTGTGCTGGATGTCATGATGGGCGGAATGTCCGGTTT    224
                             |||..||   ||.|||||.||||||...||.|.|||.|||||
BPUM_2989        145 ATCCATCTCTTACTT---CTAGATGTGATGATGCCGGGTAAGTCTGGTTT    191

BSNT_04948       225 TGAAG-----CCTGCACACTTATCAGAGAGTATTCAGACGCTCCGATTTT    269
                     |||.|     ||||.|     ||.|||.|.|.|.|..|.||.||.|||||
BPUM_2989        192 TGATGTTCTTCCTGAA-----ATGAGAAAATTTACGAAAGCACCCATTTT    236

BSNT_04948       270 TTTCCTGACGGCAAGATCATCCGACGCGGACAAATTATCGGGCTTTGCGG    319
                     .|...|.||.||||||.|.||.||.|..||.|||.|..|.||.|||||..
BPUM_2989        237 CTATTTAACTGCAAGAACGTCTGATGTAGATAAACTGACCGGTTTTGCTC    286

BSNT_04948       320 TTGGAGCTGATGACTATATCACAAAACCATTTAATCCGCTGGAATTAGCG    369
                     ..||.||.|||||.||.||||||||.||||||||||||||.||..|.|.|
BPUM_2989        287 AAGGGGCAGATGATTACATCACAAAGCCATTTAATCCGCTAGAGCTTGTG    336

BSNT_04948       370 GCGCGGATCAGAGCGCATCTCAAGCGTACATATCAATC----GAAAGAAA    415
                     ||..|.||.|..||.||..|.||.||.||||||  |||    .||||.||
BPUM_2989        337 GCTAGAATTAAGGCTCACTTAAACCGAACATAT--ATCTCTTTAAAGGAA    384

BSNT_04948       416 CGAGTTCAAA--------TCAAA---CCTACACATATG---ATTACTTTA    451
                      ||   |.||        |||||   |.|||..|||||   |||.||   
BPUM_2989        385 -GA---CCAAGATGAGGCTCAAAGTCCATACGAATATGCCCATTTCT---    427

BSNT_04948       452 CTTTTTCTCCGCAAAATGCCGAGTTGATCGTAGGCGGGGAAGCCGTTGCC    501
                     |||.|..|||.||....||.||.||||..|||.|.||.||.|....|||.
BPUM_2989        428 CTTATCATCCTCATTCAGCTGAATTGAAAGTAAGAGGAGAGGTGACTGCA    477

BSNT_04948       502 TGTTCAGCCCAGCT--TCTGCAGCTTT--TGCAGTATTTTTGTGAACACC    547
                     ||.||.||.|||||  |||    ||||  ||.||||.||||||||.||.|
BPUM_2989        478 TGCTCTGCTCAGCTACTCT----CTTTACTGAAGTACTTTTGTGATCATC    523

BSNT_04948       548 CTAACGTGGTGCTTTCCAAAGATCAAATATATGAAAAAGTATGGGGCTAT    597
                     |.||.|||||.||.||.|||||.|||||.|||||.||||||||||||..|
BPUM_2989        524 CGAATGTGGTTCTCTCAAAAGACCAAATCTATGAGAAAGTATGGGGCGTT    573

BSNT_04948       598 CCTTCCTACGGTGACAACAACACCGTCATGGTTCATATTCGCAAGCTTAG    647
                     ||.||.||.|||||.|||||||||||.|||||.||||||||.|||||.||
BPUM_2989        574 CCATCATATGGTGATAACAACACCGTGATGGTACATATTCGAAAGCTGAG    623

BSNT_04948       648 GGAGAAGATTGAGCGCGATCCGAGCAATCCGGAGTATATTGTAACCGTTC    697
                     .||.|||||.|||...|||||.||..|.||.||.||||||||.||..|.|
BPUM_2989        624 AGAAAAGATCGAGTTAGATCCAAGTCAGCCCGAATATATTGTGACGATCC    673

BSNT_04948       698 GAGGTCTCGGCTATCGTTTTATCCCAAATCCTGAAGGCAAGCGGTCATGA    747
                     |.||..|.||.|||...|||||.|||.|.||   ||..||| |.||||.|
BPUM_2989        674 GTGGAATGGGATATAAATTTATACCACACCC---AGTAAAG-GTTCATCA    719

BSNT_04948       747 ----    747
                         
BPUM_2989        720 ATAA    723


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