Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04969 and BPUM_2994
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:42
# Commandline: needle
# -asequence dna-align/BSNT_04969___fhuD.1.24716.seq
# -bsequence dna-align/BPUM_2994.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04969___fhuD-BPUM_2994.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04969___fhuD-BPUM_2994.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04969___fhuD
# 2: BPUM_2994
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1058
# Identity: 608/1058 (57.5%)
# Similarity: 608/1058 (57.5%)
# Gaps: 229/1058 (21.6%)
# Score: 1545.5
#
#
#=======================================
BSNT_04969___ 1 ATGACCCATATATACAAGAAACTCGGAGCCGCGTTT------------TT 38
..||||..|.||.|.|..||| ||
BPUM_2994 1 ---------------GTGAAAAACCGATCTGGATTTCTTTTGATATCCTT 35
BSNT_04969___ 39 TGCC---------CTGTT----ATTGATTGCAGCGCTGGCAGCCTGCGGG 75
.||| ||.|| .|||.||||| |||||
BPUM_2994 36 AGCCATTCTCATGCTTTTTACAGTTGCTTGCA------GCAGC------- 72
BSNT_04969___ 76 AATAAC-TCAGAAAGCAAAGGTTCTGCCTCTGATTCAA-AAGGCGCA-GA 122
|| |||.|.|..||| ||||.|.| ||| .||| | ||
BPUM_2994 73 ----ACTTCAAATAAAAAA---TCTGGCGC-----CAACCAGG---ATGA 107
BSNT_04969___ 123 AACCTTTACATACAAGGCTGAAAACGGAAATGTAAAAATCCCGAAGCATC 172
.|||.|.||.||..|||.||.|||.||..|.||.|||.||||.||..|||
BPUM_2994 108 CACCATCACCTATCAGGATGTAAAAGGTGAAGTCAAACTCCCTAAAGATC 157
BSNT_04969___ 173 CTAAACG---GGTGGTTGTCATGGCAGACGGCTATTACGGCTACTTCAAA 219
|.||||| .|||.||.|| ||.||..||||.|||||..||.||...
BPUM_2994 158 CAAAACGAATTGTGCTTCTC---GCTGAAAGCTACTACGGTGACCTCGTG 204
BSNT_04969___ 220 ACACTCGGCA-----TCAACGTTGTCGG----TGCGCCTGAGAATGTATT 260
|||||.|||| .||| ||| |.| |||.|| |.|.||
BPUM_2994 205 ACACTTGGCAAGACGCCAA--TTG-CTGCAACTGCACC------TATCTT 245
BSNT_04969___ 261 TAAAAACCCTTACTACAAAGGAAAAACCGACGGCGTCGAAAACATCGGA- 309
|||||||||||.|||.|||||.|||||.||.||.|||.|||||.|.|||
BPUM_2994 246 TAAAAACCCTTTCTATAAAGGCAAAACGGATGGTGTCAAAAACCTTGGAA 295
BSNT_04969___ 310 -GACGGCACTTCGGTTGAAAAGGTCATTGATTTGAACCCTGACCTGATTA 358
.|| |.||||.||.|||||||||...|.||||||.||.||..||||||
BPUM_2994 296 CAAC--CCCTTCTGTCGAAAAGGTCGCCGCTTTGAAGCCAGATATGATTA 343
BSNT_04969___ 359 TCGTCTGGACAACACAGGGCGCTG-ATATTAAAAAGCTTG---------A 398
|||..||| |.|| |.||.||||| .||| |
BPUM_2994 344 TCGCTTGG------------GGTGAAGATGAAAAA-TTTGATCAATACAA 380
BSNT_04969___ 399 AAAAATTGCGCCGACTGTCGCAGTAAAATACGATAAGCTCGACAACAT-- 446
||||||||||.|.||.||.||..|.||||||.|| |||.||
BPUM_2994 381 AAAAATTGCGACAACCGTTGCCATTAAATACAAT--------CAATATTC 422
BSNT_04969___ 447 ------CGAACAGCTGAAAGAATTTGCAAAAATGACGGG--AACTGAAGA 488
.||.||.|||||||||||.|..||||||||.|| .||.|| |
BPUM_2994 423 CTTTAAAGATCAACTGAAAGAATTCGGTAAAATGACAGGTACACCGA--A 470
BSNT_04969___ 489 TAAAGCTGAAAAATGGCTGGCCGAGTGGGATAAAAAAGT---TGCGGCCG 535
.|||||...|.|||||.|..|..|.|||||||.||||.| ||.||
BPUM_2994 471 AAAAGCAACAGAATGGATCACAAAATGGGATACAAAAATAAGTGAGG--- 517
BSNT_04969___ 536 CTAAA-ACAAAAATCAAAAAAGCGGTCGGTGACAAAACCATTTCCATTAT 584
|||| .|.|||.|||.||||||..||||..|||||||..||||.||..|
BPUM_2994 518 -TAAAGCCTAAAGTCACAAAAGCAATCGGCAACAAAACTGTTTCTATCGT 566
BSNT_04969___ 585 GCAAAC----GAACGGAAAAGACATTTACGTATTTGGTAAAGACTTTGGA 630
|..|.| || .||||..||.||..|.||||| |||.||.||.|.
BPUM_2994 567 GTCACCTTTTGA----TAAAGGGATCTATATCTTTGG-AAACACCTTTGC 611
BSNT_04969___ 631 A----GAGGCGGAAGCATCATTTACAAAGACCT-------CGGCCTGCAG 669
| ||||||.| ||.|||||..|.||.|| || |||
BPUM_2994 612 ACGCGGAGGCGAA---ATTATTTATGACGAGCTGAAATTACG---TGC-- 653
BSNT_04969___ 670 GCTACAAAG---CTGACAAAAGAAAAAGCCATTGACCAGGGGC--CAGGT 714
|| ||||| .|||.||||| |.|||||.|| |||.||| | ||.
BPUM_2994 654 GC--CAAAGGCAGTGAAAAAAG---ATGCCATCGA-CAGCGGCGTC-GGC 696
BSNT_04969___ 715 TATACAAGTATTTCATTAGAGAAGCTCCCTGATTTCGCCGGGGATTACAT 764
|||.|||..|||||..|.||.|||||.||.||.|.|||.||.||.|..||
BPUM_2994 697 TATGCAAACATTTCTCTTGAAAAGCTGCCAGAATACGCAGGCGACTTTAT 746
BSNT_04969___ 765 TTTCGCGGGCCCATGG-------CAATCAGGCGGTGATGATGGCGGC--- 804
||||.|..|.|||||| |||..|| |.|.||.|.|
BPUM_2994 747 TTTCACTAGTCCATGGAGCGGTTCAAAAAG-------TAAAGGGGACCAG 789
BSNT_04969___ 805 GTATTTGACAGCTCCATTTGGAAGAA------CCTGAATGCCGTTAAAAA 848
||.|.|||.|||..||||||| |.| || |||.||..||||
BPUM_2994 790 GTGTATGAAAGCAGCATTTGG--GCATCACTTCC----TGCTGTACAAAA 833
BSNT_04969___ 849 TGGCCATGTATACAAGATTGATCCGATTGGCTTCTATTTCACAGACCCGA 898
|...||.||||...|.||.|||||..|.||.|.||..||.|..|||||..
BPUM_2994 834 TAAACACGTATTTGAAATCGATCCTGTCGGGTACTTCTTTAATGACCCAG 883
BSNT_04969___ 899 TTTCATTAGAAGGACAACTGGAGTATATTACGGAAAGCTTGACTAA---- 944
||||||||||||||||.||.||||.||||...||..|.||.|| |
BPUM_2994 884 TTTCATTAGAAGGACAGCTTGAGTTTATTGTCGATCGTTTAAC--ATCTG 931
BSNT_04969___ 945 ----ATAA 948
||||
BPUM_2994 932 CATCATAA 939
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