Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04971 and BPUM_2995
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:42
# Commandline: needle
# -asequence dna-align/BSNT_04971___yvsH.1.24716.seq
# -bsequence dna-align/BPUM_2995.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04971___yvsH-BPUM_2995.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04971___yvsH-BPUM_2995.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04971___yvsH
# 2: BPUM_2995
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1461
# Identity: 1053/1461 (72.1%)
# Similarity: 1053/1461 (72.1%)
# Gaps: 105/1461 ( 7.2%)
# Score: 3576.0
#
#
#=======================================
BSNT_04971___ 1 ATGGAACAGACAAAAAAATGGGGTTTTTGGTTATTAACGGCGTTTGTCGT 50
|||||||||||||||||||||||||||||||||||.|||||.||||||||
BPUM_2995 1 ATGGAACAGACAAAAAAATGGGGTTTTTGGTTATTGACGGCATTTGTCGT 50
BSNT_04971___ 51 TGGAAATATGGTTGGATCAGGAAT-TTTCTCCTTGCCGAGCTCGCTTGCT 99
.|||||||||||.||.|||||.|| |||.|.| ||||.||..|||||||
BPUM_2995 51 CGGAAATATGGTAGGTTCAGGCATCTTTATGC-TGCCAAGTACGCTTGC- 98
BSNT_04971___ 100 TCAA--TTGCGAGTCCGTTTGGAGCTACGTCCGCCTGGCTTTTGACAGGT 147
|.| .|||.|||||.||.||.|..|||...||.||||||.|.||||||
BPUM_2995 99 -CCAGCATGCTAGTCCTTTAGGTGTGACGATGGCATGGCTTGTCACAGGT 147
BSNT_04971___ 148 GCCGGCGTGCTGATGATTGCACTTGTGTTCGGACATTTGTCCATTCGCAA 197
|.|||.||||||||||||||||||||.||.||.|||||||||||||..||
BPUM_2995 148 GGCGGTGTGCTGATGATTGCACTTGTTTTTGGGCATTTGTCCATTCATAA 197
BSNT_04971___ 198 GCCTGAACTGACAGCGGGACCGCAAAGTTATGCAAGAGCGCTGTTTTCTG 247
|||..|.||.||.||.|||||.|||||||||||||||||.||.|||...|
BPUM_2995 198 GCCGCAGCTAACGGCTGGACCACAAAGTTATGCAAGAGCACTTTTTAACG 247
BSNT_04971___ 248 ACCCGAAAAAAGGCAACGCTGCCGGTTTCACAATGGTGTGGGGCTACTGG 297
|.|||||||||||.||.||.||||||||.||||||||.|||||.||.|||
BPUM_2995 248 ATCCGAAAAAAGGGAAAGCGGCCGGTTTTACAATGGTTTGGGGATATTGG 297
BSNT_04971___ 298 GTGGCGAGCTGGATCAGTAACGTGGCGATCATCACAAGTCTCGCCGGTTA 347
||.||.||.|||||.|||||.||.||.||.||.||.|||||.||||||||
BPUM_2995 298 GTAGCAAGTTGGATTAGTAATGTCGCAATTATTACGAGTCTTGCCGGTTA 347
BSNT_04971___ 348 CTTGACTTCGTTCTTCCCGATCTTGGT-------TGATAAACGTGAGATG 390
.||.||..|.||.|||||.|| | ||| |.||| ||||
BPUM_2995 348 TTTAACGACATTTTTCCCTAT-----TCTCACCGTGA-AGACG-GAGA-- 388
BSNT_04971___ 391 TTTTCGATCGGCGGGCAAGA---GGTGACACTCGGCCAATTACTG---AC 434
||||| |.|...||..|||| |.|.|||||.||.|| .||| ||
BPUM_2995 389 TTTTC-ACCTTTGGAAAAGAAGCGATCACACTTGGTCA---GCTGACAAC 434
BSNT_04971___ 435 GTTTGCCGTATGTACGA-TCTTGTTATGGGGAACGCACGCGATTCTT-GT 482
||||...||||||||.| ||||.|| ||||||||.||..||| |||| .|
BPUM_2995 435 GTTTATTGTATGTACCATTCTTCTT-TGGGGAACACATACGA-TCTTAAT 482
BSNT_04971___ 483 TGCCAGCATTAA-CGGCGCAAGTAAACTAAACTTTGTCACAACGCTTTCT 531
|.|.||| |||| ||..|||||||||.||||||||.|.||.||..||||.
BPUM_2995 483 TACAAGC-TTAAGCGCTGCAAGTAAATTAAACTTTATTACGACCTTTTCA 531
BSNT_04971___ 532 AAAGTGTTAGGTTTTGTCTTCTTTATCGTTGCCGGTTTATTTGTGTTTCA 581
||.||..|.||.||.|||.|.|||||.|||||.||.|||||||..||.||
BPUM_2995 532 AAGGTACTTGGGTTCGTCCTTTTTATTGTTGCGGGATTATTTGCATTCCA 581
BSNT_04971___ 582 AACGGCATTATTCGGTCATTTTTATTTCCCGGTTCAAGGAGAA----AAC 627
||||||||||||.|..||||.|||.|||||.|||..||.|||| ||.
BPUM_2995 582 AACGGCATTATTTGAACATTATTACTTCCCAGTTGCAGCAGAAGGTGAAG 631
BSNT_04971___ 628 GGCACAA-GCATTGGAATTGGCGGCCAGGTTCATAACGCCGCGATTTCTA 676
| || || |.|||.||||.|||||.||||||.|.||.||.|||||.|
BPUM_2995 632 G----AATGC-TCGGACTTGGAGGCCAAGTTCATCATGCGGCCATTTCCA 676
BSNT_04971___ 677 CACTGTGGGCGTTTGTCGGAATTGAATCCGCGGTGATCCTGTCCGGCCGT 726
||||.|||||.|||.|.||.||.|||||.||.||.||..|.||.||..|.
BPUM_2995 677 CACTATGGGCATTTATTGGCATCGAATCTGCTGTCATTTTATCAGGAAGA 726
BSNT_04971___ 727 GCGCGCTCTCAGCGTGATGTGAAACGTGCGACAATTACCGG-CTTGCTGA 775
|||..|||.||||||||||||||||||||.||.|||||.|| ||| .|.|
BPUM_2995 727 GCGTCCTCGCAGCGTGATGTGAAACGTGCAACGATTACAGGTCTT-TTAA 775
BSNT_04971___ 776 TTGC-----CTTGAGCATATATATTATTGTGACTTTAATTACGATGGGTG 820
|||| || ||.||.||.|||.|.|||||.|||||.|||||.|
BPUM_2995 776 TTGCACTCTCT-----ATCTACATGATTATTACTTTGATTACAATGGGCG 820
BSNT_04971___ 821 TTCTGCCGCATGATAAGCTTGTC--GGCTCTGAAAAACCATTTGTTGATG 868
|.||||||||.|||.|| ||| | |||||.||.||||||||.|||||.|
BPUM_2995 821 TCCTGCCGCACGATCAG-TTG-CAAGGCTCAGATAAACCATTCGTTGACG 868
BSNT_04971___ 869 TACTCTATGC-GATTGTTGGAAACG-CGGGAAGCGTGATT---ATGGCGC 913
||||..| || .|||.|||| | |||...|||..||| |||||.|
BPUM_2995 869 TACTACA-GCTTATTATTGG----GCCGGCTGGCGGAATTGTGATGGCAC 913
BSNT_04971___ 914 TTTTGGCTATCCTTTGTTTATTCGGAACGATGCTCGGCTGGATTTTGCTT 963
|..|.||.||..||||||||||.||..||||||||||||||||.||.|||
BPUM_2995 914 TGCTTGCGATTATTTGTTTATTTGGTTCGATGCTCGGCTGGATCTTACTT 963
BSNT_04971___ 964 GGCTCTGAGGTGCCATACCAAGCCGCTAAAGCAGGAGATTTCCCGGCATT 1013
||.||.||.||.||.||.|||||.||.||.||.||.||||||||.|||.|
BPUM_2995 964 GGTTCAGAAGTACCGTATCAAGCAGCAAAGGCTGGCGATTTCCCAGCAGT 1013
BSNT_04971___ 1014 TTTTGCAAAAACGAATAAAAAGGGAAGTCCGGTCATTGCACTTATTA--- 1060
.|||||||||||.||.|||||.||.|||||.||..|||| .|||
BPUM_2995 1014 ATTTGCAAAAACAAACAAAAAAGGCAGTCCTGTTTTTGC----TTTAACG 1059
BSNT_04971___ 1061 -TTACAAACGTCATGTCACAGGTCTTCATTTTCTCGGTTATTTCCCGGAC 1109
|||||||..|||||||||||.|.||.||||||||.||.||.||.||.||
BPUM_2995 1060 GTTACAAATATCATGTCACAGCTGTTTATTTTCTCAGTAATGTCTCGTAC 1109
BSNT_04971___ 1110 AATAAGTGACGCATTTACATTTTTAACGACAGCGGCTACACTTGCATATT 1159
.||.|.|||.||.|||||.||||||||||||.|.||.||||||||.|||.
BPUM_2995 1110 GATTAATGAAGCTTTTACCTTTTTAACGACATCAGCGACACTTGCGTATC 1159
BSNT_04971___ 1160 TAATTCCGTATCTGGTATCTGCAATCTACAGCTTGAAGGTAGTCATCA-- 1207
|.|||||||||.|.||.|||.|.|||||.|||||.|| ||||||.|
BPUM_2995 1160 TCATTCCGTATATTGTGTCTTCGATCTATAGCTTTAA---AGTCATTATG 1206
BSNT_04971___ 1208 -AAGGTGAAACGTATGACCAGCTGAAAGGCTCCCGTGTAAGAGACGGATT 1256
|||||||.||||||||||..|..|||||....||...||||||||||.|
BPUM_2995 1207 CAAGGTGACACGTATGACCTTCAAAAAGGGAAGCGAACAAGAGACGGAAT 1256
BSNT_04971___ 1257 GATCGCGAT-ACTGGCGTGTGCATACTCCGTGTTTGTTATCGTAACAGGC 1305
.||.|||.| |.||...|| |.|||.||||..|..|||||..|..||||.
BPUM_2995 1257 CATTGCGCTGATTGCAATG-GGATATTCCGCTTGGGTTATTATTTCAGGA 1305
BSNT_04971___ 1306 ACAGCAGATTTAACGACATTTATCCTCGGCATCGGTTTATTCTTTGTCGG 1355
|||||.|||||.|..||||||...||.||||||||..|.|||||.||.||
BPUM_2995 1306 ACAGCTGATTTGAAAACATTTGGACTTGGCATCGGCCTGTTCTTAGTAGG 1355
BSNT_04971___ 1356 CTTAATCGTTTATCCATTTGTGAGTAAAAAG---TTCCAGAAAGAAA--- 1399
..|..|..||||||||||..| ||.||||| ||.| |||||.||
BPUM_2995 1356 TATTTTGCTTTATCCATTCAT--GTCAAAAGGATTTGC-GAAAGGAACGG 1402
BSNT_04971___ 1400 AACAAGCATAA 1410
||.||
BPUM_2995 1403 AATAA------ 1407
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