Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04975 and BPUM_3000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:42
# Commandline: needle
# -asequence dna-align/BSNT_04975___yvsG.1.24716.seq
# -bsequence dna-align/BPUM_3000.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04975___yvsG-BPUM_3000.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04975___yvsG-BPUM_3000.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04975___yvsG
# 2: BPUM_3000
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 531
# Identity: 342/531 (64.4%)
# Similarity: 342/531 (64.4%)
# Gaps: 78/531 (14.7%)
# Score: 1098.0
#
#
#=======================================
BSNT_04975___ 1 ATGACAGGAAAAACACACATCATGGGAGGCATCGCTTCTTGTACGGCAGC 50
||||||||||||||||||||.|||||.||.|||||..|.|..|||||.|.
BPUM_3000 1 ATGACAGGAAAAACACACATTATGGGCGGAATCGCCGCCTCAACGGCCGT 50
BSNT_04975___ 51 GGCTTATTATTATGGATTTGATCCAGTGCTTATGGCTGCGTCAGGCGCGG 100
.||.||.||.||.|||||.||.||||||.|.||||||||..|.||..|.|
BPUM_3000 51 CGCCTACTACTACGGATTCGACCCAGTGATCATGGCTGCAGCTGGATCAG 100
BSNT_04975___ 101 TTGGAGCATTAATACCCGATATCTGCCACACACAAAGCAAAATCGGGAGA 150
..||.||.||.||.||.|||.|.|||||.|||.||||.||||||||.|||
BPUM_3000 101 CAGGTGCTTTGATTCCTGATCTTTGCCATACAAAAAGTAAAATCGGTAGA 150
BSNT_04975___ 151 AAATTTCCTATTTTATCGAAAGTGGTCAGCTCCGTTTTTGGCCATCGCAC 200
||||||||..|..|.|||....||.|||||..|||.||.||.||||||||
BPUM_3000 151 AAATTTCCGCTGCTCTCGGCCCTGATCAGCAGCGTGTTCGGTCATCGCAC 200
BSNT_04975___ 201 ATTTACACACAGCTTGCTGTTTATGCTCATCATGTTTTTTATCACTTCTA 250
||||||||||||.||..|.|||.|.||.|||||.|.||||.||.|..|.|
BPUM_3000 201 ATTTACACACAGTTTATTATTTCTACTGATCATTTATTTTCTCGCGACAA 250
BSNT_04975___ 251 CATACATTCCAGATAAAAACATATCAGCCGGCCTGATGATC--------- 291
|||||||||||.|| |.|.||||.|..|||
BPUM_3000 251 CATACATTCCAAAT------------GACAGCCTAAGTATCGGTTTACTA 288
BSNT_04975___ 292 ---GGAATGGCGAGCCACTTGATTCTTGACGCTTGGACGGTGAACGGAAT 338
|||||||||||||||.|.||.|||||.|||.||||.||||||||.||
BPUM_3000 289 GTTGGAATGGCGAGCCACCTTATCCTTGATGCTGGGACAGTGAACGGCAT 338
BSNT_04975___ 339 CAAATTATTA--------TTCCCTTCAACGATCCGCGTTCGGCTTCCATT 380
.|||||.||| ||||.||.|| ||.||.||.||.||
BPUM_3000 339 TAAATTCTTATTTCCAGCTTCCATTAAA--------GTGCGTCTCCCCTT 380
BSNT_04975___ 381 ATATATGAAGACAGGCAGTTTTTC------TGAGCAGCTCGTGCTAGCCG 424
.|||.|.||.|||||||| | .||.||..||||.|||||.|
BPUM_3000 381 CTATGTCAAAACAGGCAG-----CACAGGAAGAACAAGTCGTACTAGCTG 425
BSNT_04975___ 425 GCCTGACCCTTG-CTTCA--TGTTACTACTT-----TTATATGCTG--TT 464
..||.|| || |.||| |||||.|||.| |.||.|||.| |.
BPUM_3000 426 CTCTCAC---TGTCGTCACCTGTTATTACATCGCCGTCATTTGCGGCATA 472
BSNT_04975___ 465 TC-ATGGGCGCAT---GTTTTAA-------- 483
|| || .|.||| |||.|||
BPUM_3000 473 TCGAT--CCCCATTCAGTTCTAACAGAATAA 501
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