Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04976 and BPUM_3001

See Amino acid alignment / Visit BSNT_04976 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence dna-align/BSNT_04976___yvgJ.1.24716.seq
#    -bsequence dna-align/BPUM_3001.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04976___yvgJ-BPUM_3001.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04976___yvgJ-BPUM_3001.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04976___yvgJ
# 2: BPUM_3001
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2010
# Identity:    1291/2010 (64.2%)
# Similarity:  1291/2010 (64.2%)
# Gaps:         315/2010 (15.7%)
# Score: 3883.5
# 
#
#=======================================

BSNT_04976___      1 ATGAAAGGAACCTTTTTTC-ACAATCAGCGGTTTTTATGT-TTTTCGATC     48
                     |||||||    |.|||||| |.|||||..|||||||| || |.|||.|||
BPUM_3001          1 ATGAAAG----CGTTTTTCAAAAATCACTGGTTTTTA-GTGTATTCCATC     45

BSNT_04976___     49 TTATTTATGTGGATCAAAACGTATGTGATATATAAACTCGGCTTTGATTT     98
                     .|.||.||||||||.|||||.||..|.||.|||.||||.||      |||
BPUM_3001         46 CTTTTCATGTGGATGAAAACATACATCATTTATCAACTAGG------TTT     89

BSNT_04976___     99 GCAAAT-CGATAC------TCTGTTGGAGGAGCTAAT-GCTGC---TGGT    137
                     .||.|| ||| ||      ||||||..|.|    ||| |||||   ||.|
BPUM_3001         90 TCACATACGA-ACGGCCAATCTGTTTCATG----AATGGCTGCTTTTGAT    134

BSNT_04976___    138 CAACCCGCTCAGCTTTATTCTTCCTTTATTCGGGATCGGCCTGCTTCTGA    187
                     |||.||.||.||||||.|.||||||||.||.|||||.|..|| |||.|.|
BPUM_3001        135 CAATCCACTTAGCTTTCTACTTCCTTTGTTTGGGATAGCTCT-CTTTTTA    183

BSNT_04976___    188 AAGGAAA-CAAGCAGCGGGCTTTTTTGCTGATTGCCAATTTGGTTCTGAC    236
                     ||.|||| |||.||...||.||||||..|||.|||.|||||..||||.||
BPUM_3001        184 AATGAAACCAAACAAAAGGTTTTTTTATTGACTGCAAATTTTATTCTCAC    233

BSNT_04976___    237 TGTTATCTTGATCTCTAATACGATTTTTTACGGCTTTTATATCGATTTTA    286
                     .|..||.|||||.||.||||||||.|||||.|||||||||||.|||||.|
BPUM_3001        234 GGCGATATTGATATCGAATACGATCTTTTATGGCTTTTATATTGATTTCA    283

BSNT_04976___    287 TTACCATTCCGGTTTTATTTCAGGCGAGCAACATGAGCGATATGGGAAGC    336
                     ||||||||||.||..||||.||.||||..||||||.|.||||||||.|||
BPUM_3001        284 TTACCATTCCCGTGCTATTCCAAGCGAAGAACATGGGAGATATGGGTAGC    333

BSNT_04976___    337 AGTGTAAAAGAATTGTTCCATCCTCTGTTTATCGCCCTGTTTGTGGAT--    384
                     |||.|.|..|||||.|||||.||.||.||          |.|||.|||  
BPUM_3001        334 AGTATGACGGAATTATTCCACCCGCTTTT----------TGTGTTGATGC    373

BSNT_04976___    385 ---TTGGTTTT-TC-----TGCT--GCTGTTCGCCAGAAAAAC-CAAAC-    421
                        |||.|||| ||     ||||  ||||.||       |||| ||||| 
BPUM_3001        374 TCGTTGATTTTGTCGTACTTGCTTGGCTGCTC-------AAACGCAAACC    416

BSNT_04976___    422 ----ACCCACAGACAAAAGCCGC-TCCCCGCACGATCAAACGGTACTATG    466
                         .|||     |||||||..| |.|..| |||||||||...||.||||
BPUM_3001        417 ATTAGCCC-----CAAAAGCGTCATACAAG-ACGATCAAAACATATTATG    460

BSNT_04976___    467 C----------AGCTTCC---TGCGGCAT---------GCTTTTATG---    491
                     |          ||.||||   ||...|||         |||.|.|||   
BPUM_3001        461 CGATCTGCTGTAGTTTCCTATTGTTTCATATCAGCTCAGCTATGATGGAT    510

BSNT_04976___    492 CACACTGGCACTTGCAGAAGTACAGCAGCCGAAGCTTT-TGGCACATTCT    540
                     |||.||                       |||   ||| ||.||...|||
BPUM_3001        511 CACCCT-----------------------CGA---TTTCTGACAAGCTCT    534

BSNT_04976___    541 TTTGACCGGGAAATGCTAGTCAAAAGCATCGGCCTGTTTCAGTTCCATAT    590
                     |.|||.||.|||.|..|.||.|.||.|.||||.|||||.||.||||||.|
BPUM_3001        535 TATGATCGTGAAGTCATTGTTAGAAACCTCGGGCTGTTCCAATTCCATCT    584

BSNT_04976___    591 TTACGA---TACAATTTCTCAGACTGTTAATATCAGCGCG----------    627
                     .|||||   |.|   |.|.||          |.||||.||          
BPUM_3001        585 GTACGACGGTGC---TGCCCA----------AACAGCACGCATTGGACAA    621

BSNT_04976___    628 AAAGCTTTTGCCGATGAAGACAGTATA--------ACTGCCATTA-AAAA    668
                     ||.||.|||||.|||||||     |||        ||||    || .|||
BPUM_3001        622 AAGGCCTTTGCAGATGAAG-----ATACGCTTTCTACTG----TAGCAAA    662

BSNT_04976___    669 CTACACAGAGGCTGATTACAGCAAGCCTG-ATCAAAGCAAA------TTC    711
                     |||.|||.|||||||||||||      || |.|||| |.||      ||.
BPUM_3001        663 CTATACAAAGGCTGATTACAG------TGCACCAAA-CGAAGAGTACTTT    705

BSNT_04976___    712 GGTCTTGC-AAAGGGGCGCAA------TGTCATC-TTTGTAACACTTGAA    753
                     ||.||||| ||||    ||||      |||..|| |||    ||||||||
BPUM_3001        706 GGGCTTGCTAAAG----GCAAGAACGTTGTGTTCATTT----CACTTGAA    747

BSNT_04976___    754 TCGACCCAAAGC--TTTGTTCTGAATGAAAAAGTAAATGGAAAAGAAATT    801
                     |||||.|  |||  |||||..||||..||||.|||||||||.||.|.||.
BPUM_3001        748 TCGACGC--AGCAATTTGTCATGAACCAAAAGGTAAATGGACAATATATC    795

BSNT_04976___    802 ACCCCATTTATGAATGATCTCAT----TAAAAAAAGCTATTCCTTTGATC    847
                     ||.||.|||.|.|||.|    ||    ||||||.||.|.||..||||||.
BPUM_3001        796 ACTCCCTTTTTAAATCA----ATTGGCTAAAAAGAGTTTTTATTTTGATG    841

BSNT_04976___    848 ATTTCTATCAGCAAACAGAACAAGGCAAAACATCAGATTCAGAATTTATC    897
                     |.||.||||||||.|||||.||.||.||.||.||.||||||||.|||||.
BPUM_3001        842 AATTTTATCAGCAGACAGAGCAGGGAAAGACGTCCGATTCAGAGTTTATT    891

BSNT_04976___    898 GTCGCTAACTCACTGTATCCTTCCCTTAGC---GGCGCCGTCTTTTTCAC    944
                     ||.|||||.||.||.||||||||   ||||   |||||.|||||||||||
BPUM_3001        892 GTTGCTAATTCCCTCTATCCTTC---TAGCAGTGGCGCTGTCTTTTTCAC    938

BSNT_04976___    945 GAAAAGC----GACCATCAATTTTATACGATGTATAAATCGCTGAAGCAG    990
                         |||    ||..||.|||.|.|.|||.|.||.||...|.||||..||
BPUM_3001        939 ----AGCGAGTGATAATAAATATGACACGTTATACAAGCAGTTGAAAAAG    984

BSNT_04976___    991 CACGATTATTATTCAGCCGTC---TTTCATGCTAACCATAAAACATTTTG   1037
                        ||..|.|||..|.|||||   ||||||||.||..|.|||||.|||||
BPUM_3001        985 ---GAAAACTATCAATCCGTCCAATTTCATGCGAATAACAAAACGTTTTG   1031

BSNT_04976___   1038 GAACAGAGATGTCATGTACGATACATTTGGCATTGACCGCTTTTTTGATG   1087
                     |||..|.|||||.|||||.||..||.|.||.|||||.||.||.|.|||||
BPUM_3001       1032 GAATCGTGATGTGATGTATGAATCACTAGGAATTGATCGTTTCTATGATG   1081

BSNT_04976___   1088 TTGATGATTTTCATGTCACTCCCGGGACATCGACAAGCTGGGGTTTAAAA   1137
                     |.|||..||.||||||||.|....|||..||.||..|||||||.|||||.
BPUM_3001       1082 TCGATTCTTATCATGTCAATGAACGGAATTCCACTGGCTGGGGCTTAAAG   1131

BSNT_04976___   1138 GACAAAGAATTTTTAGAGCAGTCCGCCG---------AAAAGCTGAAAAG   1178
                     ||.|..||.||.||.||.||.|||...|         |||||.||||   
BPUM_3001       1132 GATATCGACTTCTTTGATCAATCCATTGATTATTTAAAAAAGTTGAA---   1178

BSNT_04976___   1179 CCTGCCGCAGCCGTTCTACAGCAGTTTTATCACGTTAACGAATCATTTTC   1228
                           ||||||.|..|||||.|..||.|||||.||.||.||||||||||
BPUM_3001       1179 ------GCAGCCTTATTACAGTACGTTCATCACTTTGACCAATCATTTTC   1222

BSNT_04976___   1229 CGTTTGAGATTGATGAAAAGGATCAGCTGATAGATGAATTCGATTCAAGC   1278
                     |.|||||.|||||.....||||||||.|.||.|||||||..|||||...|
BPUM_3001       1223 CATTTGAAATTGACCCGCAGGATCAGTTTATTGATGAATATGATTCGTCC   1272

BSNT_04976___   1279 AGTGATC-TGTTAAACCGCTATGTGACCACGGTTCGCTATGAGGATGAGG   1327
                     ||| |.| |.|||||||||||||||||.||.||.||||||.|.|||||.|
BPUM_3001       1273 AGT-ACCATTTTAAACCGCTATGTGACGACCGTCCGCTATCAAGATGAAG   1321

BSNT_04976___   1328 C-ATT--GAAGCATTTT-ATCAAAAAACTGAAGGACGAAGGCTTATACGA   1373
                     | |||  ||.|..|||| |||..|    ||||.||.|||||.||.||.||
BPUM_3001       1322 CGATTAAGATGTTTTTTGATCGTA----TGAAAGAAGAAGGATTGTATGA   1367

BSNT_04976___   1374 AAATTCGATGATCGTATTTATGGGAGATCATTACGGCATTTCTGAAGCCC   1423
                     .|||.|||||.|.||..|.|||||.||.|||||.|||||.|||||.||.|
BPUM_3001       1368 CAATACGATGTTTGTCCTCATGGGCGACCATTATGGCATCTCTGAGGCAC   1417

BSNT_04976___   1424 ATAACGAGGCCATGGCTGAGTTTTTAAGGAAAGACGAAATCACACCGTAT   1473
                     ||.|.|||||.|||||..||.|..|.|...||||.|||||||||||||.|
BPUM_3001       1418 ATCATGAGGCAATGGCACAGCTGCTCAATCAAGAGGAAATCACACCGTTT   1467

BSNT_04976___   1474 GACAACGTTC-AGCTCCAGCGGGTGCCGTTTATCATACATATCCCGGGAA   1522
                     || ..||.|| |.||.|||||.||.||.|||.|.||..|.||.||.||..
BPUM_3001       1468 GA-TGCGGTCAAACTGCAGCGTGTTCCATTTTTGATTTACATTCCTGGCG   1516

BSNT_04976___   1523 TCACCGATCAA-CAGCCGGAAACCATCCCTGATGCCGGGGGACAGGTC--   1569
                     ||||.|||||| || ||..|.|||||..||||..|.|     ||||||  
BPUM_3001       1517 TCACAGATCAAGCA-CCACAGACCATTTCTGAAACAG-----CAGGTCAA   1560

BSNT_04976___   1570 ---GACGTCAGGCCGACGCTGATGCATTTGCTCGGCGTTGAGACAAAAGG   1616
                        ||.||||.||||||.||..|.||.||.||.||..||||.|||||   
BPUM_3001       1561 ATGGATGTCAAGCCGACACTTCTTCACTTACTAGGGATTGAAACAAA---   1607

BSNT_04976___   1617 CGA----TATCCAATTCGGCAATGATTTGCTGTCGGGCGACCGCACCCCA   1662
                      ||    .||.|||||||||||||||||..|.||.|..||.||.||.||.
BPUM_3001       1608 -GAATTCCATTCAATTCGGCAATGATTTATTTTCAGATGAACGGACGCCT   1656

BSNT_04976___   1663 TTCGCCGTTCTGCGAAACGGCAGCTTTATTACGAACGATTATATATACAC   1712
                     |||||.||..||.|||||||.|.|||||||||..|.||.|||.|.||.||
BPUM_3001       1657 TTCGCTGTATTGAGAAACGGGAACTTTATTACAGATGAGTATCTCTATAC   1706

BSNT_04976___   1713 AAAGAACACGTGCTATAGCCAAAAAACA--------GGTGAAGTGCTGGA   1754
                     |||.|||||.||||||...|||||||||        .|||||  ||.|||
BPUM_3001       1707 AAAAAACACCTGCTATGATCAAAAAACAAAAGAACCCGTGAA--GCAGGA   1754

BSNT_04976___   1755 AGATCAGGATGCGTGCCTC--CCTTACAAGGAGAAAGCAAACGAAGAACT   1802
                     .||  ||.|||      ||  ||.||.|..||.|||||.||..||||.||
BPUM_3001       1755 TGA--AGTATG------TCAGCCCTATATAGAAAAAGCCAATAAAGAGCT   1796

BSNT_04976___   1803 TTCTCTCTCTGATAAAATTTTAAATGGTGA----CCTGCTCAGGTTT---   1845
                     .||..|.||.||.||..|..|.||||| ||    .||||    ||||   
BPUM_3001       1797 CTCCTTATCAGACAAGGTGATCAATGG-GAATTTACTGC----GTTTTTA   1841

BSNT_04976___   1846 TCCG-AATGA   1854
                     ||.| |||.|
BPUM_3001       1842 TCAGCAATAA   1851


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