Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04978 and BPUM_3002

See Amino acid alignment / Visit BSNT_04978 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence dna-align/BSNT_04978___yvgL.1.24716.seq
#    -bsequence dna-align/BPUM_3002.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04978___yvgL-BPUM_3002.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04978___yvgL-BPUM_3002.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04978___yvgL
# 2: BPUM_3002
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 889
# Identity:     523/889 (58.8%)
# Similarity:   523/889 (58.8%)
# Gaps:         200/889 (22.5%)
# Score: 1446.5
# 
#
#=======================================

BSNT_04978___      1 --------ATGTTT----AAGAAGTATTCTATTTTCATCGCAGCCTTAAC     38
                             |.||.|    |.||||||   |||.|||.|.||  |||.|.|
BPUM_3002          1 ATGATAAGAGGTGTGAACATGAAGTA---TATATTCTTAGC--CCTCATC     45

BSNT_04978___     39 TGCC------TTTCTCCT-------TGCAGCAGGCTGTTCTTCAAACCAG     75
                     | ||      ||.|||||       |||  ||..||| ...|.||.||| 
BPUM_3002         46 T-CCATATGTTTGCTCCTGAGTGGATGC--CAAACTG-AGATGAAGCCA-     90

BSNT_04978___     76 TCTTCAACGGACAGCGAGAAAAAAGTAAC-------GTTAACCATCTCAG    118
                     |||...|||      .|||||||   |||       ||    .||.||||
BPUM_3002         91 TCTAATACG------AAGAAAAA---AACAGAGCTTGT----GATTTCAG    127

BSNT_04978___    119 CTGCCGCCAG----CGCGGAGGATGCACTTGAGGAAATCCAAAAAAATTA    164
                     |.||.||.||    |    ||||||||||..||||.||            
BPUM_3002        128 CAGCGGCAAGTCTTC----AGGATGCACTAAAGGAGAT------------    161

BSNT_04978___    165 TGAA------------AAAGAGCATCAAAAT-----ATTACCATCCAAGA    197
                     ||||            |||.||||||.|.||     ||||.|     |.|
BPUM_3002        162 TGAAGCCTCCTTTCACAAACAGCATCCACATGTGACATTAAC-----AAA    206

BSNT_04978___    198 TAACTATGGCTCTTCCGGCGCCTTGCAAAAACAGATTTCTCAAGGAGCAG    247
                     |||||..||.||.||||||||.|||.|..|.||.||..|||||||||||.
BPUM_3002        207 TAACTTCGGGTCATCCGGCGCATTGAAGCAGCAAATCGCTCAAGGAGCAA    256

BSNT_04978___    248 GAGCAGATCTGTTCTTCTCAGCTGCTGAGGATAAATTTAAAAAGCTGGTG    297
                     .|||.|||||.||.||||||||.||.|            ||.|||...|.
BPUM_3002        257 AAGCCGATCTCTTTTTCTCAGCAGCAG------------AAGAGCCCTTC    294

BSNT_04978___    298 GATGA------------TGGAGATATCG--CAAAA-------AA------    320
                     |||||            ||||||.||.|  |||.|       ||      
BPUM_3002        295 GATGAACTTGTTCAATCTGGAGACATTGATCAAGATTATATCAAGGATGC    344

BSNT_04978___    321 -AGACAGCACTGATTTGGTCGGTAATGAAATTGTGCTGGTCGTACCGAAA    369
                      |.|||..|| ||.||.|||..|      ||||||         ||.|||
BPUM_3002        345 TATACAAAAC-GAGTTAGTCCTT------ATTGTG---------CCAAAA    378

BSNT_04978___    370 AACGGAGATTCACCTGTGACAAGCTT----------CAGCA-ATCTGGCT    408
                     .|.||...|||..||.|.|.||||||          ||||| ||      
BPUM_3002        379 GATGGCTCTTCCTCTATTAAAAGCTTTCAAGACGTCCAGCACAT------    422

BSNT_04978___    409 GAATCAGAAAAAATCGCCCTTGGCACTCCGGAATCCGTACCGGCAGGAGC    458
                       |..||.|||.||.||.||||||||.||.|||||.||.||.||.||..|
BPUM_3002        423 --AAAAGGAAAGATTGCTCTTGGCACACCTGAATCGGTTCCTGCTGGTAC    470

BSNT_04978___    459 TTATGGGAAAGA-ATCACTGACAAAGCTGTCTTTATGGGACAAAGTGAAG    507
                     .|||||.||||| .|| .|.|||||.|||....||||||||.||||||| 
BPUM_3002        471 ATATGGCAAAGAGCTC-TTTACAAAACTGAACATATGGGACCAAGTGAA-    518

BSNT_04978___    508 GATAAAAT--TGTGTATGGAAAAGACGTTCGCCAAGTTCTTTCTTATGTT    555
                      |.|.|||  |||.||||..|||||.||.||.||||||||....||.||.
BPUM_3002        519 -AAAGAATGCTGTCTATGCCAAAGATGTACGTCAAGTTCTAAGCTACGTC    567

BSNT_04978___    556 GAAACCGGCAATGTAGACGCAGGTATTGTTTATAAAACAGATGCCCTGGT    605
                     |||||.||.|||||||||||.|||.||||.|||||||||||.|||||.||
BPUM_3002        568 GAAACAGGAAATGTAGACGCTGGTGTTGTGTATAAAACAGACGCCCTCGT    617

BSNT_04978___    606 CTCGAAAAAGGTCAACATTATTGACGAGGCAAAAGCAGAT----ACA--C    649
                     .||.|||||.||.||.||      ||..||..|||||.||    |||  |
BPUM_3002        618 TTCTAAAAAAGTAAAAAT------CGCAGCTGAAGCAAATTCGGACATGC    661

BSNT_04978___    650 ACAGCCCAATTGTCTATCCGTTAGGAATCGTAAAAGATACAAAACACCGT    699
                     ||...||..||.|.|||||..||||.||.||.||||..||||||||.| |
BPUM_3002        662 ACTCTCCGGTTATATATCCAGTAGGGATTGTCAAAGGGACAAAACATC-T    710

BSNT_04978___    700 AA-GGAAGCGAAGGAATTTTACGAATACCTGCAATCTGATGAAGC--AAT    746
                     || ||||||.||||..||||...|||..||.|||||||||.||||  |||
BPUM_3002        711 AACGGAAGCCAAGGTCTTTTTTCAATTTCTTCAATCTGATAAAGCCAAAT    760

BSNT_04978___    747 GAAAGTATTTGAGAAATATGGCTTT--ACTGCCGAGTAG    783
                     ..|  |.|||.||||||||||||||  |.||.|  |||.
BPUM_3002        761 CTA--TTTTTAAGAAATATGGCTTTCAAGTGTC--GTAA    795


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04978 and BPUM_3002

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
