Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_06233 and BPUM_3024

See Amino acid alignment / Visit BSNT_06233 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:41
# Commandline: needle
#    -asequence dna-align/BSNT_06233___yybP.1.24716.seq
#    -bsequence dna-align/BPUM_3024.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06233___yybP-BPUM_3024.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06233___yybP-BPUM_3024.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06233___yybP
# 2: BPUM_3024
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 533
# Identity:     282/533 (52.9%)
# Similarity:   282/533 (52.9%)
# Gaps:         163/533 (30.6%)
# Score: 598.0
# 
#
#=======================================

BSNT_06233___      1 ATGAAGATCAT-TTTGACAG------TACTTGCCGGAGTGGGACTTTTG-     42
                     ||||| |..|| |.|||..|      ||.||.|||||     ||..||| 
BPUM_3024          1 ATGAA-AAAATATGTGATGGCTTTCCTATTTTCCGGA-----ACGCTTGT     44

BSNT_06233___     43 AGTGCAGGCGGATG---CGGCATGCTTGATCAGGTGAACGA-----CGGA     84
                     |.|  |.||||.||   ||||.|||||||||||||.|||||     ||  
BPUM_3024         45 ATT--AAGCGGGTGCTCCGGCTTGCTTGATCAGGTCAACGATACAGCG--     90

BSNT_06233___     85 TTGAACTATACG--AGTGAAGCAGCTGGTTATGTG---GAGAAGGTGAAG    129
                         || |||.|  |.|||.|||..||..||||||   ||.|   |..||
BPUM_3024         91 ----AC-ATATGTCACTGAGGCAAATGAATATGTGACAGACA---TTCAG    132

BSNT_06233___    130 ACATTTGCAGAGGAAGCGCCTGAATTGGCTGAGAAAGCTGT---AAATGA    176
                     ..||||.|||||||....||..||.|.|||||..|||||||   |||||.
BPUM_3024        133 CAATTTACAGAGGACTTTCCAAAACTTGCTGAAGAAGCTGTGCAAAATGC    182

BSNT_06233___    177 CACCGAGGCGAAAGAAAAACTTGAAAC---GCAGCTTGAGTCGATTCAGA    223
                     |.||.|    ||||..|.|.||  |||   ||||||.||.|| |||  ||
BPUM_3024        183 CGCCAA----AAAGGCAGAATT--AACCCAGCAGCTAGAATC-ATT--GA    223

BSNT_06233___    224 AGGCTGCCGCT---GATTTTAATGAATTAACGCCGCCTGATGCCGCAGCG    270
                     ||||.|.|..|   ||.|||||||||.|.||..|.|||.|....||||..
BPUM_3024        224 AGGCAGACATTCAAGAATTTAATGAAGTCACAGCACCTAAAATAGCAGAA    273

BSNT_06233___    271 GAGATTCAT---CAAACCATTCAGGAACATAACGAAACCTTGCAGAAAAG    317
                     ||..|.|||   ||.|.||||            ||||        |||| 
BPUM_3024        274 GACCTGCATGCGCAGATCATT------------GAAA--------AAAA-    302

BSNT_06233___    318 CGCTGAAGATG-TGTTGAAACAAGCCGAGGAAGGCAAG--GTATCGCTTA    364
                        || ||.|| |||         |.||||||....||  ||||   |||
BPUM_3024        303 ---TG-AGGTGCTGT---------CAGAGGAAATTCAGACGTAT---TTA    336

BSNT_06233___    365 AAG-AATTG-GAGCAGTCA-----GACCT---------------GGTCCA    392
                     .|| ||||| .|||||.||     |||.|               ||.|||
BPUM_3024        337 CAGCAATTGAAAGCAGACAACATTGACATTGCTGCGATGCTTGAGGACCA    386

BSNT_06233___    393 AAACGCA----------AAGCAAATTACTG----------ATGTGATG--    420
                         |||          |||||..|| |.|          ||.|..||  
BPUM_3024        387 ----GCAAGGGTTGATCAAGCAGCTT-CAGCAGTCCGTCAATCTATTGCA    431

BSNT_06233___    421 GGACA------AATTGAGAAGCTGGGTGAATAA    447
                     |||||      ||||.|.||.||     ||   
BPUM_3024        432 GGACATTGAACAATTAACAAACT-----AA---    456


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.