Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05092 and BPUM_3031
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:45
# Commandline: needle
# -asequence dna-align/BSNT_05092___rnrrnr.1.24716.seq
# -bsequence dna-align/BPUM_3031___rnr.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05092___rnrrnr-BPUM_3031___rnr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05092___rnrrnr-BPUM_3031___rnr.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05092___rnrrnr
# 2: BPUM_3031___rnr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2422
# Identity: 1775/2422 (73.3%)
# Similarity: 1775/2422 (73.3%)
# Gaps: 161/2422 ( 6.6%)
# Score: 6461.0
#
#
#=======================================
BSNT_05092___ 1 ATGGAAAAAGAAGCATTTATGGAAAAGCTTCTCTCGTTTATGAAGGAAGA 50
.||.|||||||||.|||||||||..|..|.|||.|.||||||||.||.||
BPUM_3031___r 1 GTGCAAAAAGAAGAATTTATGGATGAATTACTCGCTTTTATGAAAGATGA 50
BSNT_05092___ 51 GGCGTACAAGCCTCTGACCGTTCAGGAACTTGAGGAGATGTTAAATATTA 100
.|||||.||.||..|.||||||||.||.||.||.|.||||.|..|.||||
BPUM_3031___r 51 AGCGTATAAACCGTTAACCGTTCAAGAGCTGGAAGTGATGATGGAGATTA 100
BSNT_05092___ 101 CGGAAGCC-GAGGAGTTTAAAGAGCTCGTCAAAGC----GTTAGTCGCCT 145
| .||.|| ||.||.|.|||||||||||||||||| ||.|..|
BPUM_3031___r 101 C-CAATCCAGATGATTATAAAGAGCTCGTCAAAGCACTTGTAATAC---- 145
BSNT_05092___ 146 TGGAAGAAAAAGGGCTTATCGTACGGACGAGAAGCGACCGCTACGGCATT 195
|||||||..||||.||.|||||.||.|||.|.|||||.||||||||..|.
BPUM_3031___r 146 TGGAAGATCAAGGACTCATCGTTCGCACGCGCAGCGATCGCTACGGTGTA 195
BSNT_05092___ 196 CCGGAGAAGATGAATTTAATAAAAGGAAAGATTTCAGCCCATGCGAAAGG 245
||.||.||.|||||..|.||||||||||||.|.||.||.|||||.|||||
BPUM_3031___r 196 CCAGAAAAAATGAACCTGATAAAAGGAAAGCTGTCTGCTCATGCAAAAGG 245
BSNT_05092___ 246 ATTCGCCTTTTTGCTGCCTGAGGATACGTCGTTAAG------TGATGTGT 289
.||.||.|||.||...||.||.|| |||..| ||||.|.|
BPUM_3031___r 246 CTTTGCATTTGTGACACCAGAAGA------GTTTGGACAGGATGATATTT 289
BSNT_05092___ 290 TTATTCCGCCTAATGAGCTAAATACGGCAATGAACGGCGATATCGTCATG 339
|.||||||||.|||||||||...||.||.|||||.||.||||..||.|||
BPUM_3031___r 290 TCATTCCGCCAAATGAGCTAGGCACAGCGATGAATGGTGATACGGTTATG 339
BSNT_05092___ 340 GTGCGTCTGAACTCA-CAGTCAAGCGGCTCCAGGCAGGAAGGAACCGTCA 388
||.|||.|.|.| || .|.||||.||||.|.|...|.|||||.||.||||
BPUM_3031___r 340 GTTCGTGTCAGC-CATAAATCAAACGGCACAAAAAAAGAAGGGACGGTCA 388
BSNT_05092___ 389 TACGGATTTTAGAAAGAGCG----ATTCAGCGGGTTGTCGGCACGTATAC 434
|.||.|||.| .||||| |.||||..|||||||||.||.|||||
BPUM_3031___r 389 TCCGAATTCT----GGAGCGTAATACTCAGACGGTTGTCGGTACCTATAC 434
BSNT_05092___ 435 AGAAACGAGAAACTTCGGCTTTGTCATTCCGGACGACAAAAAAATCACGA 484
||||||||.||.|||.||||||||||||||.||.||.|||||||||||.|
BPUM_3031___r 435 AGAAACGAAAAGCTTTGGCTTTGTCATTCCTGATGATAAAAAAATCACAA 484
BSNT_05092___ 485 GTGACATCTTCATTCCGAAAAATGGGAAAAATGGAGCTGCGGAAGGGCAT 534
..||.||||||||.||||||...|..|||||||||||.|..||.||||||
BPUM_3031___r 485 CCGATATCTTCATCCCGAAATCCGCTAAAAATGGAGCGGTAGAGGGGCAT 534
BSNT_05092___ 535 AAGGTTGTTGTCAAGCTGACGAGCTATCCTGAAGGCCGCATGAACGCAGA 584
||.||.|||||.|.||||||.|||||.||.|||||..|.||||..|||||
BPUM_3031___r 535 AAAGTGGTTGTGACGCTGACTAGCTACCCAGAAGGAAGAATGAGTGCAGA 584
BSNT_05092___ 585 GGGTGAGGT---TGAAACCATTCTCGGCCACAAAAACGACCCGGGCATTG 631
|||.||.|| |||| ||.|||||.||.|||||.|||||.|||||||
BPUM_3031___r 585 GGGCGAAGTGACTGAA---ATCCTCGGTCATAAAAATGACCCTGGCATTG 631
BSNT_05092___ 632 ATATTTTATCAGTCATTCATAAGCACGGCCTGCCGGGAGAATTTCCAGCT 681
||||..|||||.|.||||||||.||.|||.||||.||.||.||.||||..
BPUM_3031___r 632 ATATCCTATCAATTATTCATAAACATGGCTTGCCAGGGGAGTTCCCAGAA 681
BSNT_05092___ 682 GACGCGATGGAACAGGCATCAAGT----ACGCCTGACACGATTGATGAAA 727
||.|||.|..|.||||| ||| ||.|||||.|||||||||||||
BPUM_3031___r 682 GAAGCGCTCCAGCAGGC----AGTAGACACACCTGAAACGATTGATGAAA 727
BSNT_05092___ 728 AAGATCTGAAAGACCGCCGTGATCTCCGTGACCAGGTGATTGTCACCATT 777
||||.||..|||.|.|.||||||||.|||.||.|...||||||||||||.
BPUM_3031___r 728 AAGACCTCGAAGGCAGACGTGATCTGCGTAACGAAACGATTGTCACCATC 777
BSNT_05092___ 778 GATGGTGCGGATGCGAAGGATTTGGATGATGCAGTTACCGTGACGAAGCT 827
||.||.||.|||||||||||.||.||||||||.|||||.|||...|||||
BPUM_3031___r 778 GACGGAGCAGATGCGAAGGACTTAGATGATGCCGTTACGGTGCAAAAGCT 827
BSNT_05092___ 828 TGATGATGGAAGCTACAAGCTTGGCGTTCACATAGCTGATGTCAGCCATT 877
.||||||||.|..||.|||||.|||||.||.||.||.||||||...||||
BPUM_3031___r 828 GGATGATGGCAAATATAAGCTAGGCGTGCATATTGCAGATGTCTCTCATT 877
BSNT_05092___ 878 ACGTAACCGAAAACTCGCCGATTGACAAAGAAGCGCTTGAAAGAGGGACA 927
|.||.||.||.|||||.||||||||..|.|||||...|||..|.||.||.
BPUM_3031___r 878 ATGTCACAGAGAACTCTCCGATTGATCAGGAAGCTTATGAGCGTGGAACG 927
BSNT_05092___ 928 AGTGTGTATCTGGTTGACCGTGTCATCCCGATGATTCCGCACAGATTGTC 977
|||||.|||||.||.|||||.|||||.||||||||.|||||..|..|.||
BPUM_3031___r 928 AGTGTATATCTCGTAGACCGCGTCATTCCGATGATCCCGCATCGCCTCTC 977
BSNT_05092___ 978 AAACGGCATCTGCTCCTTAAATCCAAAGGTTGACCGCCTGACGCTTTCTT 1027
||||||.||.|||||.||.|||||.|||||.||.||.||.||.||.||||
BPUM_3031___r 978 AAACGGAATTTGCTCATTGAATCCGAAGGTCGATCGTCTCACACTATCTT 1027
BSNT_05092___ 1028 GTGAAATGACAATTAACAGTCAGGGACAGGT-GACAGAGCACGAGATATT 1076
||||||||...|||.|..|..|.|||.|||| |.|| |.||.|||||.||
BPUM_3031___r 1028 GTGAAATGGTCATTGATCGAAATGGAAAGGTCGTCA-AACATGAGATTTT 1076
BSNT_05092___ 1077 CCAAAGTGTCATCAAAACAACGGAAAGAATGACATATTCAGATGTGAATA 1126
|||||||||.||||||||.||||||||||||||.|||||.||||||||||
BPUM_3031___r 1077 CCAAAGTGTGATCAAAACGACGGAAAGAATGACTTATTCTGATGTGAATA 1126
BSNT_05092___ 1127 AAATTCTTGTTGACGATGATGAAGAGCTGAAACAAAAATACGAGCCTCTT 1176
|.|||||.||.||..|.||.||||||||...|.|.|||||||||||.|||
BPUM_3031___r 1127 AGATTCTAGTCGATCAAGACGAAGAGCTTTTAGACAAATACGAGCCGCTT 1176
BSNT_05092___ 1177 GTTCCGATGTTCAAAGACATGGAGCGTCTGGCTCAAATTCTGCGCGATAA 1226
||.||.||||||.||||.||||||...||.||..|.|||||.|||||.||
BPUM_3031___r 1177 GTGCCAATGTTCCAAGAGATGGAGAAACTTGCAGAGATTCTTCGCGAGAA 1226
BSNT_05092___ 1227 GCGGATGGACCGCGGCGCCGTTGACTTTGATTTCAAAGAAGCAAAGGTGC 1276
.||.|||||.|||||.||.||.||||||||.||||||||||||||.||||
BPUM_3031___r 1227 ACGAATGGAGCGCGGGGCTGTAGACTTTGACTTCAAAGAAGCAAAAGTGC 1276
BSNT_05092___ 1277 TTGTTGATGACGAAGGAGCGGTTAAAGACGTTG-TGATCAGAGAACGCTC 1325
||||.|||||.||||||||.|..|||||||||| ||.|| |.|||||.||
BPUM_3031___r 1277 TTGTGGATGAAGAAGGAGCAGCGAAAGACGTTGTTGTTC-GTGAACGTTC 1325
BSNT_05092___ 1326 TGTCGCCGAGAAGCTGATTGAAGAATTTATGCTTGTAGCAAACGAAACAG 1375
.|||||||||||..|.|||||||||||.||||||||||||||||||||.|
BPUM_3031___r 1326 AGTCGCCGAGAAATTAATTGAAGAATTCATGCTTGTAGCAAACGAAACGG 1375
BSNT_05092___ 1376 TGGCGGAGCATTTCCATTGGATGAACGTCCCGTTTATATACCGGATTCAC 1425
|.||.|||||||||||.||||||||.||.||.||.||.||.||.||||||
BPUM_3031___r 1376 TTGCAGAGCATTTCCACTGGATGAATGTACCTTTCATCTATCGAATTCAC 1425
BSNT_05092___ 1426 GAAGAGCCGAATGCTGAAAAGCTGCAAAAGTTTTTAGAATTTGTGACGAC 1475
|||||.||.|||.||||.|||||.||....||||||||.||.|||||.||
BPUM_3031___r 1426 GAAGAACCAAATCCTGAGAAGCTTCAGCGCTTTTTAGAGTTCGTGACAAC 1475
BSNT_05092___ 1476 ATTTGGCTATGTGGTGAAAGGAACGGCGGGGAATATTCATCCGCGCGCGT 1525
.|||||.||..|.||||||||||||.||...||.||.|||||.||.||..
BPUM_3031___r 1476 GTTTGGTTACATTGTGAAAGGAACGTCGACAAACATCCATCCACGTGCAC 1525
BSNT_05092___ 1526 TGCAAAGCATTCTGGACGCTGTGCGTGA-CAGACCAGAGGAAACGGTTAT 1574
|.|||||..|.||.||.||||||.|.|| || ||||||.|||...||.||
BPUM_3031___r 1526 TTCAAAGTGTACTTGATGCTGTGAGGGATCA-ACCAGAAGAAGTTGTGAT 1574
BSNT_05092___ 1575 ATCTACTGTTATGCTCCGTTCGATGAAACAGGCGAAATACGACCCGCAAA 1624
|...|||||.|||||.||||||||||||||||||||.||.||.|||.|||
BPUM_3031___r 1575 ACAAACTGTCATGCTTCGTTCGATGAAACAGGCGAAGTATGATCCGGAAA 1624
BSNT_05092___ 1625 GCTTGGGGCACTTCGGTCTGTCAACGGAATTCTATACGCATTTCACATCG 1674
||.|.||.||.||.|||.|.|||||||||||||||||.|||||||||||.
BPUM_3031___r 1625 GCATCGGCCATTTTGGTTTATCAACGGAATTCTATACACATTTCACATCA 1674
BSNT_05092___ 1675 CCGATCCGCCGTTATCCGGACTTAATCGTTCACCGCCTGATCCGAACGTA 1724
|||||||||||||||||||||||||||||.||..|.|||||..||||.||
BPUM_3031___r 1675 CCGATCCGCCGTTATCCGGACTTAATCGTGCATAGACTGATTAGAACCTA 1724
BSNT_05092___ 1725 TTTGA-TCAACGGCAAAGTC-GATGAAGCGACTCAGGAAAAGTGGGCTGA 1772
||||| ||| |..||||.| ||.|||||.||.|..||||||||||
BPUM_3031___r 1725 TTTGATTCA--GAAAAAGACAGACGAAGCAACCCTAGAAAAGTGGG---- 1768
BSNT_05092___ 1773 ACGC------CTGCCGGATATCGCCGAACATACATCATCAATGGAGCGCC 1816
|| ||.||.||.||.||.||.|||.|.||..|.|||||.||||
BPUM_3031___r 1769 --GCCAGTTGCTTCCTGAAATTGCAGATCATGCGTCTACCATGGAACGCC 1816
BSNT_05092___ 1817 GTGCAGTTGACGCCGAGCGTGAGACGGATGATCTGAAAAAAGCGGAATAC 1866
|..||||.||.||.||||||||.||.||||||||.||.||.||.||||..
BPUM_3031___r 1817 GCTCAGTCGATGCAGAGCGTGAAACAGATGATCTCAAGAAGGCAGAATTT 1866
BSNT_05092___ 1867 ATGCTTGATAAAATCGGTGAAGAGTTTGACGGCATGATCAGCTCTGTGAC 1916
|||||||||||||||||||||||||||||.||||||||.||.||.|||||
BPUM_3031___r 1867 ATGCTTGATAAAATCGGTGAAGAGTTTGATGGCATGATTAGTTCCGTGAC 1916
BSNT_05092___ 1917 AAACTTCGGAATGTTCGTCGAGCTGCCGAATACAATTGAAGGACTCGTCC 1966
.||||||||..|.||.||.||.||||||||||||||||||||.||.||||
BPUM_3031___r 1917 GAACTTCGGGCTATTTGTTGAACTGCCGAATACAATTGAAGGTCTTGTCC 1966
BSNT_05092___ 1967 ACGTCAGCTTTATGACAGATGACTACTACCGATTTGACGAACAGCATTTC 2016
|.|||||||..|||||.||.||||||||.||.|||||.||.|||||.||.
BPUM_3031___r 1967 ATGTCAGCTACATGACCGACGACTACTATCGCTTTGATGAGCAGCACTTT 2016
BSNT_05092___ 2017 GCAATGATCGGCGAGCGGACAGGCAACGTCTTCCGCATCGGGGATGAAAT 2066
||.||||||||.||.||.|||||.||.||||.|||.|||||.||||||||
BPUM_3031___r 2017 GCCATGATCGGTGAACGAACAGGGAATGTCTACCGTATCGGTGATGAAAT 2066
BSNT_05092___ 2067 CACAGTCAAGGTTGTCGATGTCAATAAAGATGAGCGCAATATCGACTTTG 2116
.||||||||.||.||..||||||||||||||||.|.|...||.||.||||
BPUM_3031___r 2067 TACAGTCAAAGTGGTGAATGTCAATAAAGATGAACACTCCATTGATTTTG 2116
BSNT_05092___ 2117 AAATTGTCGGCATGAAGGGCACTCCGCGGCGT------CCGAGAGAATT- 2159
||||.|||||.|||||.||||| |||| ||| ||.|.|||.||
BPUM_3031___r 2117 AAATCGTCGGTATGAAAGGCAC-CCGC--CGTAAATCACCAAAAGATTTT 2163
BSNT_05092___ 2160 -------------GGACAG------CAGCCGGAGCAGAAAA-----CGCG 2185
|||||| |||| ||||| ||||
BPUM_3031___r 2164 AAGTTTAAAAAACGGACAGATTCACCAGC-------GAAAAAAGGGCGCG 2206
BSNT_05092___ 2186 G-------AAAGCCTGCCAGAAAACGTGTTCAAAGCACCAATACACCTGT 2228
| ||.|||| |.| |||.| |||| ||||
BPUM_3031___r 2207 GAGGTCAAAATGCCT--CTG-----GTGAT-AAAG--CCAA--------- 2237
BSNT_05092___ 2229 GTCTCCAGCTCCGTCTGAGGAAAAAG------GGGAGTGGTTCACTAAGC 2272
.|||||.|||| |.||.|||||||| |.||
BPUM_3031___r 2238 ---------------AGAGGATAAAGGCGGAAGTGACTGGTTCAC-AGGC 2271
BSNT_05092___ 2273 CG----AAGAAGAAAAAGAAAAAACGCGGCTTCCAGAATGCTCCGAAACA 2318
|| ||||||||||||||||||||||.|||..|.||.||.||.|||||
BPUM_3031___r 2272 CGTAAAAAGAAGAAAAAGAAAAAACGCGTCTTTGATAACGCACCAAAACA 2321
BSNT_05092___ 2319 GAAACGGAAAAAGAAGAAATAG 2340
.||.||.||||||||.||.||.
BPUM_3031___r 2322 AAAGCGTAAAAAGAAAAAGTAA 2343
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