Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05117 and BPUM_3043
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_05117___opuCA.1.24716.seq
# -bsequence dna-align/BPUM_3043___opuCA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05117___opuCA-BPUM_3043___opuCA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05117___opuCA-BPUM_3043___opuCA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05117___opuCA
# 2: BPUM_3043___opuCA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1165
# Identity: 866/1165 (74.3%)
# Similarity: 866/1165 (74.3%)
# Gaps: 38/1165 ( 3.3%)
# Score: 3127.0
#
#
#=======================================
BSNT_05117___ 1 TTGCTGAAATTGGAACAAGTGTCAAAAGTATATAAAGGCGGCAAAAAAGC 50
|||||||||.|.||..|.||.||.||....||||||||.||.||||||||
BPUM_3043___o 1 TTGCTGAAACTAGAGAATGTATCTAAGACGTATAAAGGTGGAAAAAAAGC 50
BSNT_05117___ 51 TGTGAACAGCATTGATTTAGATATTGCCAAAGGTGAATTTATCTGTTTTA 100
|||.||.|..|||||||||||.||.||.|||||.||||||||.|||||||
BPUM_3043___o 51 TGTCAAAAATATTGATTTAGACATAGCAAAAGGAGAATTTATTTGTTTTA 100
BSNT_05117___ 101 TCGGCCCGAGCGGCTGCGGAAAAACGACGACGATGAAGATGATCAACAGA 150
|.||.|||||.|||||.||.||.||.||.||.|||||||||||||||.||
BPUM_3043___o 101 TTGGACCGAGTGGCTGTGGTAAGACCACAACCATGAAGATGATCAACCGA 150
BSNT_05117___ 151 CTGATAGAACCATCGTCTGGAAGGATCTTTATCGACGGAGAAAATATTAT 200
||.||.|||||.||.||.||||..||.||.|||||.||||||||||||||
BPUM_3043___o 151 CTCATCGAACCTTCCTCAGGAAACATTTTCATCGAGGGAGAAAATATTAT 200
BSNT_05117___ 201 GGAACAGGACCCGGTTGAGCTGAGGAGAAAAATCGGCTATGTGATTCAGC 250
|.||.|.||.||.|||.|..|.||.|||.|||||||.|||||||||||||
BPUM_3043___o 201 GAAAAAAGATCCAGTTCAATTAAGAAGAGAAATCGGTTATGTGATTCAGC 250
BSNT_05117___ 251 AGATTGGTTTGTTCCCCCATATGACCATCCAGCAGAACATCTCACTCGTA 300
|.|||||..||||.|||||||||||||||..|||.|||||||||||.||.
BPUM_3043___o 251 AAATTGGACTGTTTCCCCATATGACCATCGCGCAAAACATCTCACTTGTG 300
BSNT_05117___ 301 CCAAAGCTGCTGAAATGGCCTGAGGAAAAGCGGAAAGAACGGGCGCGCGA 350
||||||||..|.||||||||.||.|||||.|||||.|||||.||.|||||
BPUM_3043___o 301 CCAAAGCTCTTAAAATGGCCGGAAGAAAAACGGAACGAACGAGCACGCGA 350
BSNT_05117___ 351 GCTGTTAAAGCTTGTGGATATGGGCCCGGAGTATTTAGACCGTTATCCGT 400
.|||.|.|||||.||.||.||||||||.||.|.||||||.||.|||||..
BPUM_3043___o 351 ACTGCTGAAGCTCGTCGACATGGGCCCAGAATTTTTAGAGCGCTATCCTC 400
BSNT_05117___ 401 ATGAGCTCAGCGGCGGACAGCAGCAGAGAATCGGCGTGCTGCGCGCCCTG 450
||||.||.||.||.||||||||||||.|.|||||.||.||.|||||.|||
BPUM_3043___o 401 ATGAACTGAGTGGAGGACAGCAGCAGCGCATCGGAGTTCTTCGCGCACTG 450
BSNT_05117___ 451 GCAGCGGAACCCCCTCTCATTTTAATGGATGAACCGTTCGGAGCGCTTGA 500
|||||.|||||||||||.||..|.|||||.|||||.||.||.||.|||||
BPUM_3043___o 451 GCAGCAGAACCCCCTCTGATCCTCATGGACGAACCATTTGGTGCTCTTGA 500
BSNT_05117___ 501 TCCGATTACGCGTGATTCCCTTCAGGAAGAATTCAAAAAACTGCAGAGAA 550
|||.|||||.||.|||.|..|.|||||||||||.||.||||||||.|.||
BPUM_3043___o 501 TCCAATTACACGAGATACATTGCAGGAAGAATTTAAGAAACTGCAAAAAA 550
BSNT_05117___ 551 CCTTAAACAAAACGATTGTGTTTGTAACCCACGATATGGATGAAGCGATT 600
|.|||||.|||||.||.||.||.||.||.||.||.|||||||||||||||
BPUM_3043___o 551 CATTAAATAAAACCATCGTCTTCGTCACACATGACATGGATGAAGCGATT 600
BSNT_05117___ 601 AAGCTTGCTGACAGGATTGTGATATTAAAAGCGGGAGAAATCGTTCAAGT 650
||.||.||||||.|.||||||||.|||||||..|||||.||.||.|||||
BPUM_3043___o 601 AAACTAGCTGACCGAATTGTGATTTTAAAAGATGGAGAGATTGTCCAAGT 650
BSNT_05117___ 651 CGGCACACCTGATGAGATTCTTCGAAACCCGGCAAATGAGTTTGTTGAAG 700
.|||||||||||.||.|||.|.||.|||||.||.||.|||||.||.||||
BPUM_3043___o 651 AGGCACACCTGAAGATATTTTACGTAACCCAGCCAACGAGTTCGTAGAAG 700
BSNT_05117___ 701 AATTTATCGGGAAAGAGCGCCTGATTCAGTCAAGACCGGATATCGAGCGG 750
||||.||.||.|||||.||||||.||||.||||..|||.||||.||.||.
BPUM_3043___o 701 AATTCATTGGAAAAGAACGCCTGCTTCAATCAAATCCGAATATGGAACGT 750
BSNT_05117___ 751 GTAGAGCAAATGATGAACAGAACGCCGGTGACGGTATCTG-CGGACAAAA 799
|||||.|||||||||||||...|.||.||.||..|..|.| ||.|||||
BPUM_3043___o 751 GTAGAACAAATGATGAACACGTCACCTGTCACCATTACAGTCGAACAAA- 799
BSNT_05117___ 800 CGCTTT--CTCAGGCGATTCAGCTGATGAGAGAAAAACGTGTTGACTCGC 847
|.|| ||.|.||.||..|..|.||||||||.||.||.||.||.||..
BPUM_3043___o 800 --CATTGACTGATGCCATCTACATCATGAGAGAGAAGCGGGTCGATTCCT 847
BSNT_05117___ 848 TGCTCGTTGTGGACCGGCAAAA---CGTGCTGAAGGGCTATGTTGATGTG 894
||||.||.||.||| .|||| .|||.|.||.||||||.|.|||.|.
BPUM_3043___o 848 TGCTTGTAGTAGAC---GAAAATGGTGTGTTAAAAGGCTATATCGATATT 894
BSNT_05117___ 895 GAAATGATTGATCAAAACCGCAAAAAAGCGAGC-ATCGTTGGCGA---CG 940
||||..||||||...||.||||.||||||| || .|||||||.|| |.
BPUM_3043___o 895 GAAACAATTGATGCGAATCGCAGAAAAGCG-GCTTTCGTTGGTGAGATCC 943
BSNT_05117___ 941 TATACCGTTCAGATATATATACCGTTCAAAAAGGGGCGCTTCTTCGCGAT 990
||.| |.||||..|.|||||.||.|||.||||.||.|||||..|.||.
BPUM_3043___o 944 TAAA---TACAGAGTTCTATACTGTACAAGAAGGCGCACTTCTCAGAGAC 990
BSNT_05117___ 991 ACAGTCCGAAAAATTTTGAAGCAGGGGATCAAGTATGTTCCGGTGGTCGA 1040
||.||.||.|||||.||.|..|..||.||.||.|||||.|||||.|||||
BPUM_3043___o 991 ACCGTTCGGAAAATCTTAATACGCGGTATTAAATATGTACCGGTTGTCGA 1040
BSNT_05117___ 1041 TG---AACAGAACCATTTAGCAGGGATTGTGACAAGAGCGAGCCTCGTTG 1087
|| ||..| ||.|||..|||.|||||||||.|.||.||.||.||.|
BPUM_3043___o 1041 TGCCAAAGGG---CACTTAAAAGGCATTGTGACACGGGCAAGTCTTGTAG 1087
BSNT_05117___ 1088 ATATCGTATACGATTCCATTTGGGGCGACGAGGAAAACCAGC-TCATGAC 1136
||.|.||.|||||.|||||||||||.||||| .|..||||| || ||.|
BPUM_3043___o 1088 ATGTTGTGTACGACTCCATTTGGGGAGACGA--TACGCCAGCGTC-TGCC 1134
BSNT_05117___ 1137 ---GATCTGA----- 1143
||..|||
BPUM_3043___o 1135 ATTGAAATGAACTAA 1149
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