Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05134 and BPUM_3057

See Amino acid alignment / Visit BSNT_05134 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:47
# Commandline: needle
#    -asequence dna-align/BSNT_05134___gapA.1.24716.seq
#    -bsequence dna-align/BPUM_3057___gapA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05134___gapA-BPUM_3057___gapA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05134___gapA-BPUM_3057___gapA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05134___gapA
# 2: BPUM_3057___gapA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1008
# Identity:     889/1008 (88.2%)
# Similarity:   889/1008 (88.2%)
# Gaps:           0/1008 ( 0.0%)
# Score: 3969.0
# 
#
#=======================================

BSNT_05134___      1 ATGGCAGTAAAAGTCGGTATTAACGGTTTTGGTCGTATTGGACGTAACGT     50
                     ||||||||||||||||||||||||||.|||||.|||||||||||||||||
BPUM_3057___g      1 ATGGCAGTAAAAGTCGGTATTAACGGATTTGGACGTATTGGACGTAACGT     50

BSNT_05134___     51 ATTCCGCGCAGCATTAAACAATCCTGAAGTTGAGGTAGTAGCGGTTAACG    100
                     |||.||.|||||||||||||||||||||||||||||||||||||||||||
BPUM_3057___g     51 ATTTCGTGCAGCATTAAACAATCCTGAAGTTGAGGTAGTAGCGGTTAACG    100

BSNT_05134___    101 ATTTAACAGATGCTAACATGCTGGCTCACCTTTTACAATATGATTCTGTA    150
                     ||.|||||||.|||||||||||.||.|||||||||||||||||.|||||.
BPUM_3057___g    101 ATCTAACAGACGCTAACATGCTTGCACACCTTTTACAATATGACTCTGTT    150

BSNT_05134___    151 CACGGAAAATTAGACGCTGAAGTTTCAGTTGACGGTAACAACCTTGTTGT    200
                     |||||||||.||||.||.||.|||||.||.||.||||..|||.|.||.||
BPUM_3057___g    151 CACGGAAAACTAGATGCAGAGGTTTCTGTAGATGGTACGAACTTAGTAGT    200

BSNT_05134___    201 TAACGGCAAAACAATTGAAGTTTCTGCAGAACGCGATCCTGCTAAACTTA    250
                     .|||||.||||||||.|||||.||.||.||.||.||.|||||.|||.|.|
BPUM_3057___g    201 GAACGGTAAAACAATCGAAGTATCAGCTGAGCGTGACCCTGCGAAATTAA    250

BSNT_05134___    251 GCTGGGGCAAACAAGGCGTTGAAATCGTAGTTGAATCTACTGGTTTCTTC    300
                     |||||||.|||||||||||.||||||||.||||||||||||||.||||||
BPUM_3057___g    251 GCTGGGGTAAACAAGGCGTAGAAATCGTTGTTGAATCTACTGGATTCTTC    300

BSNT_05134___    301 ACAAAACGCGCAGACGCTGCGAAACACTTAGAAGCTGGCGCGAAAAAAGT    350
                     ||||||||.|||||||||||.||||||||||||||||||||.||||||||
BPUM_3057___g    301 ACAAAACGTGCAGACGCTGCAAAACACTTAGAAGCTGGCGCTAAAAAAGT    350

BSNT_05134___    351 AATCATCTCTGCTCCTGCTAACGAAGAAGATATCACAATCGTTATGGGTG    400
                     .|||||||||||||||||||||||||||||||||||||||||||||||||
BPUM_3057___g    351 CATCATCTCTGCTCCTGCTAACGAAGAAGATATCACAATCGTTATGGGTG    400

BSNT_05134___    401 TTAACGAAGATAAATACGATGCGGCTAACCACGATGTTATCTCTAACGCA    450
                     |.||||||||.|||||||||||.||||.|||||||||.||||||||.|||
BPUM_3057___g    401 TAAACGAAGACAAATACGATGCAGCTAGCCACGATGTCATCTCTAATGCA    450

BSNT_05134___    451 TCTTGCACAACAAACTGCCTTGCGCCGTTTGCAAAAGTACTTAACGATAA    500
                     |||||.||||||||||||.|.||.||.|||||||||||||||||||||||
BPUM_3057___g    451 TCTTGTACAACAAACTGCTTAGCTCCATTTGCAAAAGTACTTAACGATAA    500

BSNT_05134___    501 ATTCGGCATCAAACGCGGTATGATGACAACTGTTCACTCTTACACAAACG    550
                     |||.||.||.||||||||||||||||||||.||||||||.||||||||.|
BPUM_3057___g    501 ATTTGGTATTAAACGCGGTATGATGACAACAGTTCACTCATACACAAATG    550

BSNT_05134___    551 ATCAGCAAATCCTTGATCTTCCGCACAAAGACTACCGTCGTGCGCGTGCA    600
                     |.||.|||||.||||||||||||||||||||||||||||||||.||||||
BPUM_3057___g    551 ACCAACAAATTCTTGATCTTCCGCACAAAGACTACCGTCGTGCTCGTGCA    600

BSNT_05134___    601 GCAGCTGAAAACATCATCCCTACATCAACTGGTGCTGCTAAAGCAGTTTC    650
                     ||.||.||||||||||||||.||.||.||.||||||||.|||||.|||||
BPUM_3057___g    601 GCTGCGGAAAACATCATCCCAACTTCTACAGGTGCTGCGAAAGCTGTTTC    650

BSNT_05134___    651 TCTAGTTCTTCCTGAACTAAAAGGCAAACTGAACGGTGGAGCAATGCGTG    700
                     .||.||..|.||||||||.|||||.|||.|.||||||||.||.|||||||
BPUM_3057___g    651 ACTTGTATTGCCTGAACTTAAAGGTAAATTAAACGGTGGCGCTATGCGTG    700

BSNT_05134___    701 TTCCAACTCCAAACGTTTCTCTAGTTGACTTGGTTGCTGAACTGAACCAA    750
                     |||||||.||.|||||||||.||||||||.|.||.||||||.|.||||||
BPUM_3057___g    701 TTCCAACACCTAACGTTTCTTTAGTTGACCTTGTAGCTGAATTAAACCAA    750

BSNT_05134___    751 GAAGTAACAGCTGAAGAAGTAAACGCAGCTCTTAAAGAAGCGGCTGAAGG    800
                     ||.|||||.||||||||.|||||.|||||.|||||||||||.||||||||
BPUM_3057___g    751 GATGTAACGGCTGAAGATGTAAATGCAGCACTTAAAGAAGCAGCTGAAGG    800

BSNT_05134___    801 CGACCTTAAAGGAATCCTTGGCTACAGCGAAGAGCCATTAGTTTCTGGCG    850
                     .||.|||||.||||||||||||||||||||||||||||||||.|||||.|
BPUM_3057___g    801 AGAACTTAATGGAATCCTTGGCTACAGCGAAGAGCCATTAGTATCTGGTG    850

BSNT_05134___    851 ACTACAACGGAAACAAAAACTCTTCTACAATCGATGCTCTTTCTACAATG    900
                     ||||.||.||.||...|||||||||.||||||||||||||||||||||||
BPUM_3057___g    851 ACTATAATGGTAATGCAAACTCTTCAACAATCGATGCTCTTTCTACAATG    900

BSNT_05134___    901 GTTATGGAAGGCAGCATGGTAAAAGTAATCTCTTGGTACGATAACGAAAG    950
                     ||.|||||||||||||||||.|||||.||.|||||||||||||||||.||
BPUM_3057___g    901 GTAATGGAAGGCAGCATGGTGAAAGTCATTTCTTGGTACGATAACGAGAG    950

BSNT_05134___    951 CGGCTACTCTAACCGCGTTGTTGACCTTGCAGCTTACATCGCAAAAAAAG   1000
                     .||.||.|||.||||||||||||||||||||||||||||.||||||.|||
BPUM_3057___g    951 TGGATATTCTCACCGCGTTGTTGACCTTGCAGCTTACATTGCAAAACAAG   1000

BSNT_05134___   1001 GTCTTTAA   1008
                     ||||||||
BPUM_3057___g   1001 GTCTTTAA   1008


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