Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05174 and BPUM_3071
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:50
# Commandline: needle
# -asequence dna-align/BSNT_05174___yvfE.1.24716.seq
# -bsequence dna-align/BPUM_3071.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05174___yvfE-BPUM_3071.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05174___yvfE-BPUM_3071.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05174___yvfE
# 2: BPUM_3071
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1274
# Identity: 805/1274 (63.2%)
# Similarity: 805/1274 (63.2%)
# Gaps: 199/1274 (15.6%)
# Score: 2296.0
#
#
#=======================================
BSNT_05174___ 1 ---ATGCATAAAAA-------AATCTACTTATCTCCCCCTCATATGAGCG 40
||| |.|.||| |||.||||||||.||.||.||||||||||
BPUM_3071 1 ATGATG-AAAGAAAGGAAACGAATTTACTTATCACCTCCGCATATGAGCG 49
BSNT_05174___ 41 GCAGGGAGCAGCACTATATTTCA--------GAAGCCTTTCGCTCA---- 78
|.|..||| |||||.| ||||||| |||
BPUM_3071 50 GAAAAGAG--------TATTTGAAAATAGAGGAAGCCT-----TCAAGAG 86
BSNT_05174___ 79 -AACTGGATCGCGCCGCTTGGGCCGCTCGTGAATTCATTTGAAGAACAGC 127
||||||||.||.|||||.||.||.||.||||||..||||| |||
BPUM_3071 87 CAACTGGATTGCACCGCTGGGACCTCTTGTGAATGAATTTG------AGC 130
BSNT_05174___ 128 TGGCA-----GAACGA-GTCGGTGTAAAAGCAGCCGCTGCGGTCGGC--- 168
.|||| |.||.| |..||.||.||.|||| |..||||
BPUM_3071 131 AGGCAGTTGCGCACTATGCAGGAGTGAAGGCAG-------GAGCGGCTTT 173
BSNT_05174___ 169 ----TCAGGAACGGCGGCGATTCATCTCGCCCT---GCGT-TTGCTTGAG 210
||.|||||.||.||.|||||.|||||..| ||.| |||.|
BPUM_3071 174 ATCTTCTGGAACAGCAGCCATTCACCTCGCATTAAAGCTTATTGGT---- 219
BSNT_05174___ 211 GTAAAAGAAGGTGACAGCGTGTTTTG--CCAGTCCTTCACATTTGTAGCA 258
||..||.||||.||||..||.||||| ||| ||.||||||||||.|||
BPUM_3071 220 GTTCAAAAAGGAGACATGGTCTTTTGTTCCA--CCCTCACATTTGTGGCA 267
BSNT_05174___ 259 ACCGCCAATCCGATTTTATATGAAAAAGCGGTGCCCGTCTTTATTGATTC 308
||.||.|||||.||||||||||||.|||||...|||||.|||||||||||
BPUM_3071 268 ACTGCAAATCCAATTTTATATGAACAAGCGACACCCGTTTTTATTGATTC 317
BSNT_05174___ 309 TGAGCCTGATACGTGGAATATGTCGCCGACAGCCCTTGAAAGAGCATTGG 358
|||....|||||.||||||||||..|||...||..|.||.|.|||.||.|
BPUM_3071 318 TGAAAAGGATACATGGAATATGTGCCCGCTTGCTTTAGAGAAAGCCTTTG 367
BSNT_05174___ 359 AGGAAGCGAAAAGAAACGGAACACTGCCAAAAGCGGTTATTGCCGTCAAT 408
|||||.|.|||.||..|||||.|...|||...||.||.||.|.|||..||
BPUM_3071 368 AGGAATCAAAACGACTCGGAAAAAGACCACGTGCAGTCATAGTCGTGCAT 417
BSNT_05174___ 409 CTATATGGGCAGAGCGCGAAAATGGATGAAATCGTAAGCC--TGTGCGAT 456
.|||||||.||.|||||.||||||||.||.||| |.|.| ||||.||.
BPUM_3071 418 TTATATGGACAAAGCGCAAAAATGGACGAGATC--ATGGCGTTGTGTGAA 465
BSNT_05174___ 457 GCATACGGAGTTCCTGTCATTGAGGACGCAGCCGAATCTCTCGGAACAGT 506
|||||||..||.||.|||||||||||.||.||.|||||..|.||..|..|
BPUM_3071 466 GCATACGATGTACCAGTCATTGAGGATGCGGCTGAATCGTTAGGCGCTCT 515
BSNT_05174___ 507 CTATAAAGG-GAAGCAAAGCGGAACATTCGGGC-GCTTCGGCATTTTTTC 554
.|||||||| ||| .|||||||..||.| |||| |.|||||..|.|.|||
BPUM_3071 516 ATATAAAGGAGAA-AAAAGCGGCTCAAT-GGGCAGGTTCGGTGTCTATTC 563
BSNT_05174___ 555 ATTTAACGGGAACAAAATCATTACCACATCAGGGGGAGGGATGCTCGTTT 604
.|||||.||.||.|||||||||||.||||||||.||.||.|||||.||..
BPUM_3071 564 GTTTAATGGAAATAAAATCATTACAACATCAGGCGGCGGAATGCTTGTGA 613
BSNT_05174___ 605 CAAATGATGAAGCCGCAATTGAAAAAGC--AAGATTTCTCGCTTCGCAGG 652
...||||||||||.||.||.| ||.|| ..|.||||||||||||||||
BPUM_3071 614 GTGATGATGAAGCTGCGATCG--AACGCTGCCGCTTTCTCGCTTCGCAGG 661
BSNT_05174___ 653 CACGAGAACCGGCTGTTCATTATCAGCACAGTCAA---ATTGGACATAAT 699
|..||||.|..||..|.||||||.|||| |||| ||.|||.||||.
BPUM_3071 662 CTAGAGAGCGCGCGATGCATTATGAGCA---TCAAGAGATAGGATATAAC 708
BSNT_05174___ 700 TACAGGCTGAGCAATATCTTAGCCGGCGTCGGCATTGCCCAGCTTGAGGT 749
||..|..|||||||..|..||||.||||||||.||.||.||..|.||..|
BPUM_3071 709 TATCGTATGAGCAACCTACTAGCAGGCGTCGGGATCGCTCAAATGGAAAT 758
BSNT_05174___ 750 GCTGGATGAGCGAGTGGAGACAAGAAGGAC--CATTTTCACGAGATACAA 797
..||||.|||||.||.|| |||| |||..| ||||||||.|.|.|||.|
BPUM_3071 759 ATTGGACGAGCGTGTTGA-ACAA-AAGCGCCACATTTTCAAGCGGTACCA 806
BSNT_05174___ 798 AAATGCGCTCGGTCACATAGACGGCGTCCGCTTT-----ATGCCGGAGT- 841
..||||..|...|.|..||||.|| .|||| |||||.||.|
BPUM_3071 807 TGATGCATTATCTAAAGTAGAAGG-----TCTTTATTTCATGCCAGAATA 851
BSNT_05174___ 842 ---ACGCAGCAGGCGTATCCAATCGCTGGCTCACCACGCTCACACTTGAT 888
|..||.||.| ||.||.||.|||||.||.||..|.||..|||||
BPUM_3071 852 TCAAAACACCAAG----TCTAACCGTTGGCTAACGACATTGACTATTGAT 897
BSNT_05174___ 889 -----AACGGGCTCAGC--CCATATGACGTAGTTCAACGTC-TTGCTG-- 928
|| ||| .|||.|...||.| ||.|| ||||||
BPUM_3071 898 TGTGAAA-------AGCAAACATCTCCAGTGG----ACATCATTGCTGCA 936
BSNT_05174___ 929 -------AAGAAAACATTGAAGCCCGTCCGCTGTGGAAGCCGCTCCATAC 971
|||||.|.||.|||||..|.|...|.|||||||||||.| ||
BPUM_3071 937 CTAGAAAAAGAACAGATCGAAGCAAGGCGTGTATGGAAGCCGCTGC--AC 984
BSNT_05174___ 972 C--CAGCCGCTATTCGATCCGGCTT---TATTTTATTCTCAT--GAAGAT 1014
| ||||||||.|| ||..|.|| |.||||||||...| |||
BPUM_3071 985 CAGCAGCCGCTCTT---TCGTGATTGCCTCTTTTATTCGGCTGCGAA--- 1028
BSNT_05174___ 1015 ACAGGAA---GCGTATGCGAAG-----ATTTGTTCAAGCGAGGAATCTGT 1056
|||.| .||||| |..|| ||||| ||.| |||..|.|||
BPUM_3071 1029 --AGGCACTCCCGTAT-CTGAGTTGTTATTTG---AAAC-AGGGCTTTGT 1071
BSNT_05174___ 1057 CTCCCATCGGGGTCCAATATGACAGAAGATGAGCAAGACCGGGTCATTGA 1106
|||||.||.||..|.|.|||||||||||.|||.||.||.||..|||||||
BPUM_3071 1072 CTCCCCTCTGGAACAAGTATGACAGAAGCTGAACAGGATCGTATCATTGA 1121
BSNT_05174___ 1107 AGTGC-TACTGCGCTTATTCCAAACTGCCGAGGTGAAGAAA--------- 1146
| ||||.|| |.||.|| |||| |.|||.|||
BPUM_3071 1122 ----CATACTTCG-TCATGCC---CTGC----GAGAAAAAACAATCCCCT 1159
BSNT_05174___ 1147 -TGGACAGCAAG--CATTCGATGA 1167
|..||||...| ||.||| |.|
BPUM_3071 1160 CTTCACAGGCTGCTCACTCG-TAA 1182
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