Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05176 and BPUM_3072
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:50
# Commandline: needle
# -asequence dna-align/BSNT_05176___yvfD.1.24716.seq
# -bsequence dna-align/BPUM_3072.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05176___yvfD-BPUM_3072.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05176___yvfD-BPUM_3072.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05176___yvfD
# 2: BPUM_3072
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 785
# Identity: 396/785 (50.4%)
# Similarity: 396/785 (50.4%)
# Gaps: 229/785 (29.2%)
# Score: 738.0
#
#
#=======================================
BSNT_05176___ 1 --------------------------------ATGAAA-----AACGTGG 13
|||.|| |||
BPUM_3072 1 ATGCCACAGCTGAAAAATTCAAAGGAACCGATATGTAAAGAGCAAC---- 46
BSNT_05176___ 14 CCATTG------TGGGTGACGGCGGACACGGAAAGGTGA-TCAGAGA--- 53
|.|||| |.||||..||.||.||..|.||.||.| ||| |||
BPUM_3072 47 CGATTGGTTTAATTGGTGCTGGTGGGCATAGCAAAGTCATTCA-AGAAAT 95
BSNT_05176___ 54 ----GCTG---ATAAACGCCCG----CTCAGATACGCGCTTAGCCGCGGT 92
|||| || |||| |||| |||..|||.||
BPUM_3072 96 GATTGCTGCCCAT-----CCCGATTACTCA---------TTATGCGCTGT 131
BSNT_05176___ 93 GCTGGATGATAAATT---CAAAACGTTCGAAGGCGGAAAAGAA-----TG 134
..|.||||||.|||| ..|||| |.||| ..|||||.| |.
BPUM_3072 132 ATTAGATGATCAATTTGAAGAAAC-TACGA----CTAAAAGCAGTATCTT 176
BSNT_05176___ 135 GTACACAGGACCGCCGGAAGCCGTTACT---------GAACTGCG----- 170
||| .|||||| .|..|| ||.|||.|
BPUM_3072 177 GTA---TGGACCG---------ATCTCTATGAGTCAAGAGCTGAGAGAGA 214
BSNT_05176___ 171 CAGGCTCATTCCTGATGTGCTGTTTCTGATTGCTGTTGGGAATAACAGTG 220
|| ||.||..||.||...|..||||||||..||||..|.|| ||
BPUM_3072 215 CA-----ATACCGCATATGAAATGGCTGATTGCGATTGGACAAAA---TG 256
BSNT_05176___ 221 TCAGAAAACAGCTGG---CGGAGCGACTGGGAC-TGAGGAAAGATG--AT 264
..||.|.||||.|.| .|||.||.||.| | |..|||||.|.| |
BPUM_3072 257 AGAGCAGACAGTTAGTAAAGGAACGCCTCG--CTTTTGGAAACACGGCA- 303
BSNT_05176___ 265 TTTATTACATTGATTCACCCGTCAGCCATCGTCAG--CAGGTCGGCTGTC 312
|||...|||.|.||.||.||....||..||||.|| || ||.||..||
BPUM_3072 304 TTTGCCACACTCATCCATCCACGGGCGGTCGTAAGTCCA--TCAGCGATC 351
BSNT_05176___ 313 ATTGGGGAAGGG--ACAGTGATTATGGCGGGCGCGATCATTCAGGCGGAT 360
||| ||||||| .|.||..|.|||||....||..||.||||.||.|||
BPUM_3072 352 ATT--GGAAGGGGAGCTGTCGTGATGGCAACGGCAGTCGTTCAAGCAGAT 399
BSNT_05176___ 361 GC-GCGCATCGGCGCTCATTGC-ATCATCAATACGGGTGCAGTGGCAGAG 408
|| || .|||||.|..|| ||| ||.|||||.||.||..||.|.|.||||
BPUM_3072 400 GCAGC-AATCGGTGAACA-TGCGATTATCAACACAGGATCAATCGTAGAG 447
BSNT_05176___ 409 CACG-----ATAATCAAATCAGCGATTACGTTCATCTGTCCCCG-----C 448
||.| |||.||.||| ||.|| ||.||||||||.||| .
BPUM_3072 448 CATGACTGTATACTCGAAT---CGTTT--GTGCATCTGTCACCGGGAGCA 492
BSNT_05176___ 449 GTGT---CACGCTGTCAGGAGCGGTTTCCGTTCAGGAA--GGCGCTCACG 493
|||| |..||||| ||.||.|| |.||| ||..|.||..
BPUM_3072 493 GTGTTAACTGGCTGT--------GTGTCTGT--ACGAAAGGGTACACATA 532
BSNT_05176___ 494 TCGGAACTGGTGCATCCGTCATACC--GCAGATCACAATCGG-GGCTTGG 540
|.||..|.|||||....||.||.|| |.|.|| |.||||| .|| |||
BPUM_3072 533 TAGGGGCAGGTGCTGTTGTGATTCCCGGGACAT--CGATCGGAAGC-TGG 579
BSNT_05176___ 541 AGCATTGTCGGCGCCGGCTCCGCGGT-------GATCCGTCCCATAC-CG 582
|..||..|.|||||.||..||.|.|| ||| |||| ||
BPUM_3072 580 ACAATCATTGGCGCAGGAGCCACAGTCACAAAAGAT-------ATACACG 622
BSNT_05176___ 583 GACAGGGTAACGGCGGCCGGTGCTCCGGCACGCATCATTTCTTCC----- 627
..||| ||.|.|| |.|.|.||| |.|.|.|
BPUM_3072 623 ATCAG---AAAGTCG----------CTGTAGGCA----TACCTGCAAGAG 655
BSNT_05176___ 628 -ATTCAAACATCAAACAAAGG----------ATGA 651
|.|||||.|||..|.|.||| ||||
BPUM_3072 656 AAATCAAAGATCGGAGAGAGGGTGGTGGGAAATGA 690
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