Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05190 and BPUM_3080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:51
# Commandline: needle
# -asequence dna-align/BSNT_05190___yveN.1.24716.seq
# -bsequence dna-align/BPUM_3080.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05190___yveN-BPUM_3080.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05190___yveN-BPUM_3080.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05190___yveN
# 2: BPUM_3080
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1280
# Identity: 748/1280 (58.4%)
# Similarity: 748/1280 (58.4%)
# Gaps: 274/1280 (21.4%)
# Score: 1926.0
#
#
#=======================================
BSNT_05190___ 1 ATGACGAAAAAGATATTGTTTTGCGCGACTGTTGATTATCATTTTAAGGC 50
||||.||||||..|.|||||||||||.||.|||||.|||||||||.||||
BPUM_3080 1 ATGAAGAAAAAAGTCTTGTTTTGCGCAACGGTTGACTATCATTTTCAGGC 50
BSNT_05190___ 51 CTTTCACCTCCCTTATTTTAAATGG-TTCA--AACAAATGGGCTGGGAGG 97
.||||||||.||.||||||...||| |||| ||||| ||.|||||.|
BPUM_3080 51 ATTTCACCTTCCGTATTTTCGGTGGTTTCAGGAACAA---GGATGGGAAG 97
BSNT_05190___ 98 TTCATGTCGCCGCGAACGGACAAACCAAGCTGCCGTATGTGGAT---GAG 144
|.|||...||.||.||.||.||.....||||.||.||||||||| |.|
BPUM_3080 98 TGCATACAGCGGCAAATGGTCAGCTGGAGCTTCCCTATGTGGATCAAGCG 147
BSNT_05190___ 145 AAATTCTCCATCCCGATTC-GCAGGTCACCTTTTGCCCCT---CAGAACC 190
.| |||.||.||||||| || |.||.|||||| |.| ||.||||
BPUM_3080 148 CA---CTCGATTCCGATTCAGC-GCTCTCCTTTT---CATGTGCACAACC 190
BSNT_05190___ 191 TGGC---CGTTTATAGGCAGCTGAAGAA------AGTGATCGA-CACCTA 230
||| |||.|.|.| |||||||||| ||.||..|| |||
BPUM_3080 191 -GGCTTGCGTATGTTG--AGCTGAAGAAGCTGTTAGCGAAAGAGCAC--- 234
BSNT_05190___ 231 TGAATACGACATTGTCCATTGCCATACACCGGTCGGCGGCGTTCTCGCCA 280
||||||.|..|||||||.||.|||||..|.|||.|.||..|.|..|
BPUM_3080 235 ----TACGACTTCATCCATTGTCACACACCAATGGGCAGTGTGATTGGTA 280
BSNT_05190___ 281 GACTGGCGGC--GAGGCAGGCACGGCGGCACGGAACAAAGGTGCTGTATA 328
||||.||.|| .|.|| ||.||..|..|.||.||.|||||.||.||.|
BPUM_3080 281 GACTTGCAGCCAAAAGC--GCGCGCAGAAAAGGGACGAAGGTACTTTACA 328
BSNT_05190___ 329 CAGCGCACGGATTTCACTTCTGCAAAGGAGCACCAATGAAAAATTGGCTT 378
||||.||.||.||||||||.||..|||||||.||..|..||||.|||.|.
BPUM_3080 329 CAGCACATGGCTTTCACTTTTGGCAAGGAGCGCCGCTTCAAAACTGGTTG 378
BSNT_05190___ 379 CTTTACTATCCGGTCGAGAAATGGCT-TTCAGCATATACGGACTGC-CTG 426
||.||.|||||..|.|||..|||||| ..|.|| .||||.||| || |||
BPUM_3080 379 CTCTATTATCCAATTGAGCGATGGCTCGCCCGC-CATACAGAC-GCTCTG 426
BSNT_05190___ 427 ATTACGATTAATGAAGAGGATTATAAACGGGCGAAAGGACT-TCAAAGGC 475
||.||.|||||||.|||.||||.||||.|.||..|..|.|| |||||
BPUM_3080 427 ATCACCATTAATGGAGAAGATTTTAAAAGAGCTGATCGTCTATCAAA--- 473
BSNT_05190___ 476 CGGGCGGAAGGACGCA------------GAAAATTCACGGCATTGGCGTC 513
.|.|||| ||| | |||..||.||.||.||.
BPUM_3080 474 AGAGCGG------GCATCTGTTTATTATG----TTCCTGGTATGGGTGTG 513
BSNT_05190___ 514 AACACCGAGCG-TTTCCGGCCTGTCAGTCCGATAGAGCAGCA-------A 555
.|.|...|.|| ||| |||.|| |
BPUM_3080 514 GATATGAAACGATTT---------------------GCACCAGTTAATGA 542
BSNT_05190___ 556 AAACTCAGAGAAAAACACGGGT-TCCGTAAAG---ATGATTTT------- 594
||| ||||||.|| |.|| |.|||..|| |||..|||
BPUM_3080 543 AAA-----AGAAAAGCA-GCGTCTTCGTGCAGTCCATGGCTTTTCTTCAG 586
BSNT_05190___ 595 -ATATTGGTTTATCCGGCTGAGC----------TCAATCTGAACAAAAAC 633
|.|| |||||...||||.|| |.|||..|||.||||||
BPUM_3080 587 CAGAT---TTTATTGTGCTGTGCGCTGGCGAATTAAATGCGAATAAAAAC 633
BSNT_05190___ 634 CA---GAAGCAGTTAATAGAAGCCGCAGCCTTGCT-------AAAAGAAA 673
|| ||.|| |.||..||||....|||..||| ||||.|..
BPUM_3080 634 CAAGGGATGC---TCATCAAAGCATGTGCCAAGCTATATAGGAAAATACC 680
BSNT_05190___ 674 AAAT-------TCCTTCGCTCCGCCTTGTGTTTGCCGGGGAAGGGGCAAT 716
|||| || ||||||||||||||||||||.||
BPUM_3080 681 AAATGTGAAGATC--------------GTGTTTGCCGGGGAAGGGGCCAT 716
BSNT_05190___ 717 GGAACAAACGTATCAAACGTTAG---------------CTGAAAAGCTTG 751
|...|..||||||.|||.|.||| .|||||||| .|
BPUM_3080 717 GCGGCCGACGTATGAAAAGCTAGTTCATGAGCTCCATCTTGAAAAGC-AG 765
BSNT_05190___ 752 GTGCCTCCGCCAATGTCTGTTTTTAC-GGCTTTTGCAGCGACATACATAA 800
|| |||| |||.| ||.||||||| .|||.|...||
BPUM_3080 766 GT-------CCAA--------TTTGCTGGTTTTTGCA--AACAAATTGAA 798
BSNT_05190___ 801 G--CTGATTCAGCTTGCG-GATGTATCTGTCGCATCCAGCATTAGAGAGG 847
| ..|||.|| .|||.| |||||||.|||..|..|.||..|.|||||.|
BPUM_3080 799 GAATGGATGCA-TTTGAGTGATGTATGTGTATCGACTAGTTTGAGAGAAG 847
BSNT_05190___ 848 GCCTCGGCATGAATGTGCTTGAGGGAATGGCGGCAGAAAAACCGGCGATC 897
|.||.|||||||||.|||||||.|..|||.|.||||||||.||||..||.
BPUM_3080 848 GGCTTGGCATGAATCTGCTTGAAGCCATGTCTGCAGAAAAGCCGGTCATT 897
BSNT_05190___ 898 GCCACAGATAATCGCGGGCATCGGGAA---ATCATTCGCGAC--GGAGAA 942
||.|||||.|||.|.||.||..|.||| |||| ||| ||.|..
BPUM_3080 898 GCTACAGAGAATAGAGGACACTGTGAACTGATCA-----GACATGGCGTG 942
BSNT_05190___ 943 AACGGTTTTCTGATCAAAATCGGTGACA----GTG-----CT--GCT--- 978
||.||.|||.|..|||||| .||| ||| || |||
BPUM_3080 943 AATGGCTTTTTAGTCAAAA-----CACATGATGTGAATGACTTGGCTGAA 987
BSNT_05190___ 979 --TTTGCCCGCCGGATTGAACAGCTTTACCATAAGCCGGAGC-TCTGCCG 1025
||||| |.||||||||.||.||...|||.| .|||||
BPUM_3080 988 TATTTGC-----------ACCAGCTTTATCACAAAAGGGATCAGCTGCC- 1025
BSNT_05190___ 1026 AAAGC----TGGGACAGGAAGGCCGAAAAACAGC-CTTGCGCTT-CTCGG 1069
| |||||.|.|.|||.||...|..||| |.|||..|| |.|
BPUM_3080 1026 ----CCTCATGGGAAAAGCAGGGCGCTCATTAGCACATGCATTTGCAC-- 1069
BSNT_05190___ 1070 AGGCGCGAACGGTGGAAGAAATGGCAGATATTTATTCCGCGTACATGGAT 1119
|||.||..||||||...|..||||.|||.||||||.||.|.||.||||
BPUM_3080 1070 AGGAGCAGACGGTGAGTGCGATGGAAGAAATTTATACCACTTATATGG-- 1117
BSNT_05190___ 1120 ATGGATATAAAGGAGAAAAGCGT-ATGA-- 1146
||.|||.|||.||| || |||.
BPUM_3080 1118 ------ATCAAGCAGAGAAG-GTGATGTGA 1140
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