Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05191 and BPUM_3081
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:51
# Commandline: needle
# -asequence dna-align/BSNT_05191___yveM.1.24716.seq
# -bsequence dna-align/BPUM_3081.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05191___yveM-BPUM_3081.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05191___yveM-BPUM_3081.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05191___yveM
# 2: BPUM_3081
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2048
# Identity: 1223/2048 (59.7%)
# Similarity: 1223/2048 (59.7%)
# Gaps: 424/2048 (20.7%)
# Score: 3447.5
#
#
#=======================================
BSNT_05191___ 1 --------------ATGATTA----------TTGCGCTGGATACTTACCT 26
|.||||| |.||.||.|||.|.||.||
BPUM_3081 1 TTGACTTACGCCCAAAGATTATCAATCATCGTGGCACTAGATTCATATCT 50
BSNT_05191___ 27 CGTTTTAAATTCAGTTATTGCAGGATATCAATTTTTAAAGGATTCCTATC 76
|.|.|| ||| ||.|.||..|||| ||.|| ||
BPUM_3081 51 CATCTT------AGT-------GGCTGTCTTTTTT----GGTTT----TC 79
BSNT_05191___ 77 AATTTTATGACTCC--GGAGC----ATTACTGCTT----------ACCGC 110
||||| .||| |.||| .|.||||.|| |..||
BPUM_3081 80 AATTT-----GTCCAAGAAGCGGCGTTAACTGTTTATACATTTGAAATGC 124
BSNT_05191___ 111 T-GTCAGCTTGCT--CCTCAG-CTA-TCATGTG-------TGTGCTTTCC 148
| |||| ||.|| .||||| ||| |||| || |.||.||||.
BPUM_3081 125 TCGTCA--TTTCTTCGCTCAGTCTACTCAT-TGGGCACCATTTGTTTTCG 171
BSNT_05191___ 149 TGT-TCAATCA---GTATAAACAGGTGTGGACATACACCGGACTTGGCGA 194
|.| |...||| |||.||.||.||.|||.|.||.||.|||.|..|.||
BPUM_3081 172 TATATTTTTCACGTGTACAAGCAAGTATGGGCTTATACAGGAGTAAGAGA 221
BSNT_05191___ 195 GCTGATTGTCCTGCTTAAGGGGATTACGCTTTCCGCCGCTGTGACCGGTA 244
| |.|||.|| .|||| .||..|| |||| |||
BPUM_3081 222 G-TTATTTTC---TTTAA--TGAAGAC-CTTT---------------GTA 249
BSNT_05191___ 245 T-----------CATTCAGT----ATGCTGT--------GTATCATACGA 271
| ..||||.| ||||||| || .||.|| |
BPUM_3081 250 TGTTCTTTTTTATTTTCAATGGCAATGCTGTACCTTTTCGT-GCAGAC-A 297
BSNT_05191___ 272 T-GTTCTTCCGTCTGTTA---ACCGCGTGCTGGGTGCTT---CAGCTTTT 314
| |..|||.|||.|.||| |.||.||| |||| ||..|.||
BPUM_3081 298 TGGCCCTTTCGTTTTTTATTCATCGTGTG------GCTTTTCCACGTATT 341
BSNT_05191___ 315 GTCTATTGGAGGGACCCGTATTTTATCCAGAGTATTAAACG-------AA 357
.|..||.||.|...|.||.||....|||||..||.|..|.| ||
BPUM_3081 342 ATTCATCGGTGCATCTCGAATGGCGTCCAGGCTACTCCATGATGGGGCAA 391
BSNT_05191___ 358 AGC----ATCAG---GAAAAAACGCTGCGCCTCGTCCCGCGCGCTGATTA 400
||| | ||| ||||||..| ||.||..|.||.|
BPUM_3081 392 AGCGGCTA-CAGGTAGAAAAAGAG-------------CGGGCTTTAATCA 427
BSNT_05191___ 401 TCGGGGCGGGCTCAGGTGGGACTCTGATGGTCAGGCAGCT---GCTTTCG 447
|.||.||.||.||.|.||||||..|.||.||..|.||||| ||..|||
BPUM_3081 428 TTGGCGCCGGATCGGCTGGGACCATTATCGTTCGTCAGCTTCAGCAATCG 477
BSNT_05191___ 448 AAAGATGAACCTGATATCATACCTGTCGCTTTTATTGATGACGACCAAAC 497
|..||||.|| ||||...|||.|||||.||.||.|||||.|||.|.||
BPUM_3081 478 AGTGATGTAC---ATATTGAACCCGTCGCCTTCATAGATGATGACAAGAC 524
BSNT_05191___ 498 GAAGCATAAATTAGAAATTATGGGGCTGCCCGTAATCGGCGGTAAAGAA- 546
|||||||||..|.|||||.|||||.|||||.||..|.||.||.||||||
BPUM_3081 525 GAAGCATAAGCTTGAAATCATGGGACTGCCTGTTCTAGGAGGAAAAGAAC 574
BSNT_05191___ 547 AGTATCATGC--CTGCGGTG------------CAAAAGCTCAAAATTAAT 582
||..|||..| |||..||| ||||||
BPUM_3081 575 AGATTCAAACAGCTGTTGTGATGATGGATATACAAAAG------------ 612
BSNT_05191___ 583 TATATTATTATTGCCATTCCTTCACTCC----GCACCCATGAGCTTCAGG 628
||.||.||.|||||||| .||| |||..|||..|.|..|.|
BPUM_3081 613 ---ATCATCATCGCCATTCC----GTCCAAAAGCAGTCATACGTTAAAAG 655
BSNT_05191___ 629 TGTTATATAAAGAATGTGT-GCGAACCGGAGTAAGCATTAAA-----ATT 672
.|.|.|||||.||.||.|| ||| ||.||.||.| ||| ||.
BPUM_3081 656 GGCTGTATAAGGAGTGCGTAGCG-ACGGGGGTCA-----AAACGCAGATC 699
BSNT_05191___ 673 ATGCCTCATTTTGATGAAATGCTGCTTGGCACACGAAC---TGC-CGGA- 717
|||||..| ||||.| ||.|.||...|.|.|||| ||| |.||
BPUM_3081 700 ATGCCGGA----GATGGA--GCAGATTTTAAAAGGAACCCATGCGCTGAA 743
BSNT_05191___ 718 -CAAATCAGAGATGTAAAGGCTGAGGACTTGCTCGGCAGAAAGCCGGTAA 766
|||.|..||||||||.||.|.|||||.||..|.||.|||.|.|||.|
BPUM_3081 744 TCAATTACGAGATGTACAGCCAGAGGATTTATTAGGGAGAGAACCGAT-- 791
BSNT_05191___ 767 CCCTCGACACTAGCGAAAT----TTCGAACCG----------CA--TCAA 800
|| ||| |||.|.||| || |.||
BPUM_3081 792 ---TC-----------AATTAGATTCAAGCCGTCTATCTGTCCATTTAAA 827
BSNT_05191___ 801 AGGAAAAACAGTTC-TTGTCACGGGAGCGGGCGGATCAATCGGCTCGGAA 849
.||.||||| |.|| |.||.||.||.||.|||||||||||.||.||.|||
BPUM_3081 828 GGGGAAAAC-GATCATGGTTACAGGGGCAGGCGGATCAATTGGATCAGAA 876
BSNT_05191___ 850 ATCTGCCGTCAGATCAGTGCGTTTCAGCCT-AAGGAAATC-ATTCTGC-- 895
|||||.|||||.||..|||.||||...||| ||| | |||.|||
BPUM_3081 877 ATCTGTCGTCAAATTTGTGTGTTTGCTCCTCAAG-----CGATTGTGCTT 921
BSNT_05191___ 896 -TCGGCCATGGGGAAAACAGCATTCATTCGATTTATAC-AGAGCTGAACG 943
|.||.|||||.|||...|||||||||||.|||| ||| |||||||||.|
BPUM_3081 922 GTGGGACATGGAGAATTTAGCATTCATTCTATTT-TACTAGAGCTGAAAG 970
BSNT_05191___ 944 GACGATT----CGGCAAACACATTGTGT-TCCATACGGAAATCGCTGATG 988
.| ||| .|| ||||..|..|| ||.||.||.||||.||.|||.
BPUM_3081 971 AA--ATTTATGGGG---ACACCATCAGTCTCTATCCGCAAATTGCGGATA 1015
BSNT_05191___ 989 TGCAGGACCGCGATAAAATGTTTACCTTGATGAAAAAATACG-------- 1030
| ||..|||||| .|||||||..|
BPUM_3081 1016 T------CCAAGATAAA--------------CAAAAAATGAGTGAAATCG 1045
BSNT_05191___ 1031 ------------AGCCGCATGTTGTCTATCATGCAGCTGCCCATAAGCAT 1068
|||||.||.|..|.||||||||.||.||.|||||||||
BPUM_3081 1046 TTGGTCAGTTTCAGCCGGATATGATTTATCATGCCGCGGCACATAAGCAT 1095
BSNT_05191___ 1069 GTGCCTTTAATGGAACACAATCCTGAAGAGGCGGTCAAAAACAATATTAT 1118
||.||..|.|||||...||.|||..||||.||.||.||||||||||||||
BPUM_3081 1096 GTCCCGCTCATGGAGATCAGTCCAAAAGAAGCCGTGAAAAACAATATTAT 1145
BSNT_05191___ 1119 CGGAACAAAAAATGTCGCGGAAGCAGCCGAT----ATGTCGGGAACAGAG 1164
|||.||||||||||||||.|||||.||..|| || ||.|..||.
BPUM_3081 1146 CGGGACAAAAAATGTCGCAGAAGCTGCACATGAGCAT----GGCATTGAA 1191
BSNT_05191___ 1165 ACATTCGTGCTGATTTCATCGGACAAAGCGGTGAACCCAGCCAACGTAAT 1214
|||||.||.||.|||||.||.|||||||||||.||.||.|||||.||.||
BPUM_3081 1192 ACATTTGTCCTCATTTCCTCTGACAAAGCGGTCAATCCTGCCAATGTCAT 1241
BSNT_05191___ 1215 GGGGGCGACAAAACGATTCGCAGAGATGATTATTATGAATCTTGGGAAAG 1264
|||.||.|||||||||||.||.||.|||.|.||.|||.|..|.||| |
BPUM_3081 1242 GGGCGCCACAAAACGATTTGCTGAAATGCTAATCATGCAAATGGGG---G 1288
BSNT_05191___ 1265 TCAGCAG---AACCAAATTTGTTGCTGTTCGCTTCGGCAATGTACTCGGG 1311
..||||| .||.||||||||.||.|||||.||.||.|||||||||||.
BPUM_3081 1289 CAAGCAGTGACACAAAATTTGTCGCGGTTCGGTTTGGAAATGTACTCGGA 1338
BSNT_05191___ 1312 AGCCGCGGCAGCGTCATTCCGATTTTCAAAAAACAGATTGAAAAAGGCGG 1361
|||.|.||.|||||||||||.|||||.||.||||||||||||.||||.||
BPUM_3081 1339 AGCAGGGGAAGCGTCATTCCAATTTTTAAGAAACAGATTGAACAAGGGGG 1388
BSNT_05191___ 1362 CCCGGTGACAGTAACACATCCGGCAATGACCCGCTATTTCATGACGATTC 1411
.|||||.||.||.|||||.||.||.|||||..|.|||||.|||||.||||
BPUM_3081 1389 GCCGGTCACGGTCACACACCCAGCCATGACAAGATATTTTATGACCATTC 1438
BSNT_05191___ 1412 CCGAGGCATCAAGGCTTGTGATTCAGGCTGGGGCACTGGCGAAAGGGCGT 1461
|.||.||||||||.|||||.||||||||.||.||.||.||..||||..|.
BPUM_3081 1439 CAGAAGCATCAAGACTTGTCATTCAGGCGGGAGCCCTAGCAGAAGGAAGA 1488
BSNT_05191___ 1462 CAAATTTTCGTTCTCGATATGGGAGAGCCCGTAAAGATTGTGGATCTTGC 1511
||.|||||.||..|.||||||||.|||||.||.||.|||||.||.||.||
BPUM_3081 1489 CAGATTTTTGTATTAGATATGGGGGAGCCAGTGAAAATTGTCGACCTCGC 1538
BSNT_05191___ 1512 CAAAAACCTCATTCATTTGTCCGGCTACACGACTGAGCAGGTTCCAAT-- 1559
..|||||||||||||..|.||.||||||||.||.||.|||.||||.||
BPUM_3081 1539 AGAAAACCTCATTCACCTCTCAGGCTACACTACAGACCAGATTCCGATTA 1588
BSNT_05191___ 1560 CGAATTCACAGGCATTCGTCCGGGCGAAAAAATGTATGAAGAATTACTGA 1609
|| ||||||||||||||.||.||.||.|||||||||||.|||.||||.|
BPUM_3081 1589 CG--TTCACAGGCATTCGCCCTGGGGAGAAAATGTATGAGGAACTACTCA 1636
BSNT_05191___ 1610 ACAAAAATGAAGTCCATGC---TGAACAAATCTTTCCAAAAATTCACATC 1656
||.||.||||| .|.|| .||||||||.||.||.||||||||.|||
BPUM_3081 1637 ACCAACATGAA---AAAGCACAGGAACAAATTTTCCCGAAAATTCATATC 1683
BSNT_05191___ 1657 GGTAAAGCGGTAGATGGCGATTGGCC----GGTGCTGATGCGCTTTATCG 1702
||..|.|||.|.|||||.|| || .|||||||..|||||||||.
BPUM_3081 1684 GGCCATGCGCTGGATGGGGA----CCCATATGTGCTGAACCGCTTTATCC 1729
BSNT_05191___ 1703 AGGATTTTCATAAGCTGCCGGAAGCTGACCTGAGAGCGAGGC--TGTTTG 1750
|.||.|||.|.|.|.||...||||...|..||||| ||.|| ||||||
BPUM_3081 1730 ATGAATTTGACATGATGAGTGAAGAGCAAATGAGA--GAAGCATTGTTTG 1777
BSNT_05191___ 1751 CGGCAATC-AAT-ACAT---------------CAGAAGAAATGA------ 1777
|.||.||| ||| |||| ||||.||.|.||
BPUM_3081 1778 CTGCCATCGAATCACATGATTTGTTGTCTGAACAGATGACAAGAGAGGGG 1827
BSNT_05191___ 1778 ----CGGCTGCC------------AGCGTTCATTAG------------ 1797
||..|||| ||..||..||.|
BPUM_3081 1828 GAAGCGCTTGCCGATGAAGAAAAAAGTCTTGTTTTGCGCAACGGTTGA 1875
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