Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05194 and BPUM_3084
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:51
# Commandline: needle
# -asequence dna-align/BSNT_05194___slr.1.24716.seq
# -bsequence dna-align/BPUM_3084.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05194___slr-BPUM_3084.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05194___slr-BPUM_3084.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05194___slr
# 2: BPUM_3084
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 503
# Identity: 312/503 (62.0%)
# Similarity: 312/503 (62.0%)
# Gaps: 76/503 (15.1%)
# Score: 914.5
#
#
#=======================================
BSNT_05194___ 1 ATGATTGGAAGAATTATCCGTTTGTACCGTAAAAGAAAAGGCTATTCTAT 50
|||||.||||...|.||.||..|.|||||.||.||.|||||.||.||.||
BPUM_3084 1 ATGATAGGAAAGGTGATACGCATTTACCGAAAGAGGAAAGGATACTCCAT 50
BSNT_05194___ 51 TAATCAGCTGGCTGTTGAGTCAGGC----GTATCCAAATCCTATTTAAGC 96
|.|.||||||||||..| |.|| ||.||.|||||.|||||.||.
BPUM_3084 51 TCAGCAGCTGGCTGAAG----ATGCCCATGTCTCTAAATCGTATTTGAGT 96
BSNT_05194___ 97 AAAATTGAAAGAGGCGTTCACACGAATCCGTCCGTTCAATTTTTAAAAAA 146
||.|||||..|.||.||.||||..|||||.||.||.||.|||||||||||
BPUM_3084 97 AAGATTGAGCGCGGTGTCCACAGAAATCCATCTGTCCAGTTTTTAAAAAA 146
BSNT_05194___ 147 AGTTTCTGCCACACTGGAAGTTGAATTAACAGAATTATTTGACGCAGAAA 196
.||.||..|..|.||.||..||||.|||..|||..|.|||||.|||||.|
BPUM_3084 147 GGTATCCTCTTCGCTAGAGATTGATTTACAAGAGCTGTTTGATGCAGAGA 196
BSNT_05194___ 197 CAATGATGT---ATGAAAAAATCAGCG------GCGGTGAAGAAGAATGG 237
|.||||||| |||| || |.||||||.|.||||||
BPUM_3084 197 CGATGATGTTTCATGA---------CGCTGAGAGTGGTGAACACGAATGG 237
BSNT_05194___ 238 CGCGTACATTTAGTGCAA-GCCGTACAAGCCGGGATGGAAAAGGAAGAAT 286
||.|..|||.|.|| ||| |||||.|||.||||.|||..|||.||||||.
BPUM_3084 238 CGGGAGCATATCGT-CAATGCCGTCCAATCCGGCATGCCAAAAGAAGAAC 286
BSNT_05194___ 287 TGT-TCA-CTTTT--------------ACGAACAGGCTAAAGAAAGAACA 320
|.| ||| |||.| |.||.|||| ||||.|||||
BPUM_3084 287 TCTATCAGCTTCTCCAAACGTCTCGAAAGGAGCAGG---AAGATAGAAC- 332
BSNT_05194___ 321 GCCTGAAAC-TGCCTCTTACCGCAACCGTAAATTGACGGAATCCAATATA 369
|..|| ||.|.||.|..|.||.| |||||||.||.||||||
BPUM_3084 333 ----GTTACATGTCACTCATAGAAAGC------TGACGGATTCGAATATA 372
BSNT_05194___ 370 GAAGAATGGAAAGCGCTGATGGCGGAAGCAAGAGAAATCGGCTTGACTGT 419
..|||.|||||.|..||||||...|||||||..|..||||||||.|...|
BPUM_3084 373 TCAGAGTGGAAGGGTCTGATGAGTGAAGCAAAGGCTATCGGCTTAAGCAT 422
BSNT_05194___ 420 CTATGAAGTCAAA----TCCTTTTTAAAAACAATGGGAAGATGA------ 459
..|.|||||.||| |||||...|| .||||||..|.||
BPUM_3084 423 TGAGGAAGTAAAAGCATTCCTTGCCAA----CATGGGAGAACGACGGGCG 468
BSNT_05194___ 459 --- 459
BPUM_3084 469 TAA 471
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