Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02054 and BPUM_3090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_02054___yjeA.1.24716.seq
# -bsequence dna-align/BPUM_3090.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02054___yjeA-BPUM_3090.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02054___yjeA-BPUM_3090.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02054___yjeA
# 2: BPUM_3090
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1571
# Identity: 924/1571 (58.8%)
# Similarity: 924/1571 (58.8%)
# Gaps: 328/1571 (20.9%)
# Score: 2497.5
#
#
#=======================================
BSNT_02054___ 1 TTGTTGGCA--AAAAGAATCAAATGGTTTCATGTAT-----TAATAGCAG 43
.||.|| |||.|.| |||||| .|||| ||.|.|||.
BPUM_3090 1 ---GTGTCACTAAAGGGA--AAATGG-----AGTATCGGCCTATTTGCAC 40
BSNT_02054___ 44 TTG-------TATGTGTGGTGGGCCTTATCG--GCTTT-TTCCATAATCA 83
||| .|| |||.| ||| ||||| ||.||.|||||
BPUM_3090 41 TTGCGATCGTCAT---TGGAG-------TCGTTGCTTTCTTTCAGAATCA 80
BSNT_02054___ 84 TTCATTGAAAA--AA--GAAACGGTCATGAATAAAGTAAGAAC-TGATTC 128
|.|| || |.|||.|..|.|||.||.|||| ||| .|||.|
BPUM_3090 81 -------ACAAGCAAGTGGAACCGAGAAGAAAAATGTAA-AACAGGATAC 122
BSNT_02054___ 129 TCAATATGGGAATGTTGAGATCGCAACGCTTGTGCATGACGGGAAAACTT 178
..|.|||...||.||.||.||||..||.||.||..|||||||||||
BPUM_3090 123 GAACTATAAAAACGTCGAAATCGTTACTCTCGTAAATGACGGGAAA---- 168
BSNT_02054___ 179 TTAAT----TACGCGGTTAACTATCCCGTTT----TCAAAA--------A 212
||.|| ||.||.||.||||||||..||| |||||| |
BPUM_3090 169 TTTATGAGATATGCAGTCAACTATCCTCTTTTTCATCAAAAGAAGCTAGA 218
BSNT_02054___ 213 TGAAAAAATGGATTCGGCATTAAAAAGATTCG------CAGAAAAAGAGG 256
|||.|| ||||| ||||.|.|| |||....||||
BPUM_3090 219 TGACAA----GATTC--------AAAGCTACGCCAATTCAGCTTTAGAG- 255
BSNT_02054___ 257 TTCGTCAATTTCAAAAGGAAACAAAAGACGTTGA------CCAAGAGCAT 300
.|||||| ||||||||||.| |||||..|.|
BPUM_3090 256 ------CATTTCA---------AAAAGACGTTTAGTGAAGCCAAGGACGT 290
BSNT_02054___ 301 --ACGACA--AAACGCAACGAATTAAATGTTGATTATAAAATTGTCCATT 346
|.||.| ||||||...|||||.|||.||||||||.|.||.||.||||
BPUM_3090 291 CGATGAAAACAAACGCTTTGAATTGAATATTGATTATGATATGGTGCATT 340
BSNT_02054___ 347 ATGCCAAACAGACAGTGGCGATTGTATTTA--ATGAATATAAATACATCG 394
||||.||.|||.|.|..||||||...|||| |...|||...|||||
BPUM_3090 341 ATGCGAAGCAGTCTGCTGCGATTCGCTTTACCACTTATACCTATACA--- 387
BSNT_02054___ 395 GCGGGGCACACGGGCAAACCGTGA-----AAAAA----ACGTTTAACTAT 435
||.|| |||||..|.|| ||..| |||.|.||||||
BPUM_3090 388 ---GGTCA-----GCAAAATGGGACCACTAATCATCTCACGATCAACTAT 429
BSNT_02054___ 436 GATTTT-AGTAAACAAGCGTTTCTTTCCA--------------------- 463
|||||| || |||.||.|.||||||..||
BPUM_3090 430 GATTTTCAG-AAAAAAACCTTTCTTGACACAAAAGATCTATTTCTGCCTA 478
BSNT_02054___ 464 -----------TTGATGATATTTTCAAAGAGGACGCTGACTACA-TACAT 501
||||.||.|||.|| ||||| |||||
BPUM_3090 479 AAACCAACTTTTTGAAGAAATTATC--------------CTACATTACAT 514
BSNT_02054___ 502 AAGCTTTCGTTAATCGCTTATCACGAGCTGAAAAAGAATAAGGACATT-G 550
| |||| |||||..|||||.|.|| .||.|| .
BPUM_3090 515 A----TTCG---------------GAGCTTCAAAAGGACAA-AACCTTAT 544
BSNT_02054___ 551 CCGCGGACGATGCGCTGTTAAAGGAAGGGACGGCTCCGAAAGTAGAAAAT 600
|...|||..|.|||||..|..||.||||.||.||.||||..|...||||.
BPUM_3090 545 CTAAGGATCAAGCGCTCCTTCAGAAAGGAACAGCCCCGACTGCTCAAAAC 594
BSNT_02054___ 601 TTCAGCCGCTTTGCCATCAAGGAGGATTATATCGAACTTTACTTTGACA- 649
|||||.|..||||||.|.||.|||.|.|||.|.|||.|||| |||..||
BPUM_3090 595 TTCAGTCAATTTGCCTTGAAAGAGAAATATGTAGAATTTTA-TTTCCCAG 643
BSNT_02054___ 650 CATATCAGGTTGC--AGCAGGCTATCTTGGAGAGCAATCGATTGCCATTA 697
|.|..||.||.|| |..||| |||||||...||||.|..|.||.||||
BPUM_3090 644 CCTCGCAAGTCGCCGACGAGG--ATCTTGGTCCGCAAACACTCGCGATTA 691
BSNT_02054___ 698 AGAAAAGTCTTTTGAAAGACATTCTGAAAGAACAATATATTGATAAAGCA 747
|.||.|..||..|||||||.||..||||...|.|||||||..|||||.|.
BPUM_3090 692 AAAAGACGCTGCTGAAAGATATAATGAAGCCAGAATATATGAATAAAACC 741
BSNT_02054___ 748 AAAAATAAAAATAAAATCAAAGAACAAAAGCCGAAGCATGAA-----GTG 792
||||||.|||||.||||.|||||||.|||.||||| |.||| ||.
BPUM_3090 742 AAAAATCAAAATGAAATGAAAGAACCAAATCCGAA--AAGAAAAGCCGTC 789
BSNT_02054___ 793 ATTTCTTTA-----CCCAAAGA-GGAAACGGTTGATCCAAATCAAAAAGT 836
| | |.||||.| ..|||| ||||||.|||||||||||.
BPUM_3090 790 A-------AGCTGCCGCAAAAATCAAAAC--TTGATCTAAATCAAAAAGC 830
BSNT_02054___ 837 CATTGCGCTTACTTTCGACGATGGCCCGAATCCTGCGACAAC----AAAT 882
||||||.|||||.||.||.|||||.|||||.||||||||.|| |||
BPUM_3090 831 CATTGCCCTTACATTTGATGATGGTCCGAACCCTGCGACCACCTCAAAA- 879
BSNT_02054___ 883 CAGATTCTAGACTCCTTGAAGAAATATAAGGGTCATGCCACGTTTTTTGT 932
|||.||||..|..|||||.||.||||.||.|||||.||.|||||.||
BPUM_3090 880 ---ATTTTAGAAGCACTGAAGGAAAATAAAGGACATGCGACCTTTTTCGT 926
BSNT_02054___ 933 TTTGGGGAGCAGGGTTCAATATTATCCGGAAACGCT----AATAAGAATG 978
.||.||.||||||||.||.|||||.||.|..|.||| .|| ||.
BPUM_3090 927 ATTAGGCAGCAGGGTGCAGTATTACCCTGGTATGCTTGCCGAT----ATT 972
BSNT_02054___ 979 CTGAAAGAAGGAAATGAGGTGGGGAACCATTCATGGAGCCATCCGCTTCT 1028
||.||||..||.|||||..|.||||||||.||.|..||.|||||..|..|
BPUM_3090 973 CTAAAAGGCGGGAATGAAATCGGGAACCACTCTTACAGTCATCCTTTATT 1022
BSNT_02054___ 1029 CACAAGGCTTTCAGTGAAAGAAGCTTTAAAGCAGATCAATGATACGCAAG 1078
.|||||.|||.|..|.|||||.||..|.||.||..|.||.||.||.||..
BPUM_3090 1023 AACAAGACTTCCTTTAAAAGAGGCGGTGAAACAAGTAAAGGACACTCAGA 1072
BSNT_02054___ 1079 ACATCATTGAAAAAATAAGCGGATATCGTCCGACGCTTGTAAGACCCCCA 1128
|..|.|||||.|||...|||||.|||...||.||.|...|.|||||.|||
BPUM_3090 1073 AGCTGATTGAGAAAGCGAGCGGCTATACACCTACTCACTTTAGACCGCCA 1122
BSNT_02054___ 1129 TACGGCGGCATTAATGATGAACTGCGGAGTCAA---------ATGAAAAT 1169
||.||.||.|..|||.| .|||..| |.|||| ||||
BPUM_3090 1123 TATGGTGGAACAAATCA-AAACATC--AATCAAGCGGTTGGGATGA---- 1165
BSNT_02054___ 1170 GGATGTTGCGTTATGGGATGTTGACCCGGAAGATTGGAAAGACCGTAACA 1219
|.||..|.||||||||||||||.||.||.||||||||||..||.||||
BPUM_3090 1166 --AGGTCTCTTTATGGGATGTTGATCCAGAGGATTGGAAAGTTCGCAACA 1213
BSNT_02054___ 1220 ------AAAAAACAATTGTTGACC-----GTGTCATGAATCAGGCGGGAG 1258
|.|..|||| ||| .|.||| ||.||.|.||
BPUM_3090 1214 GCCAGCAGATCACAA------ACCACGTTCTCTCA-----CATGCAGCAG 1252
BSNT_02054___ 1259 ATGGAAGAACCATTTTGATTCACGATATTTACCGCACCTCTGCTGATGCG 1308
||||.|||||..|.|||||.|||||||||||...||.|||.|||.|.||.
BPUM_3090 1253 ATGGTAGAACGGTATTGATGCACGATATTTATGACAGCTCAGCTCAAGCA 1302
BSNT_02054___ 1309 GCCGATGAA----ATT-ATAAAAAAGCTCACCGATCAAGGCTATCAATTG 1353
||.| |||| ||| ||.|| ||||||.|.|||||.|||||..|.
BPUM_3090 1303 GCAG-TGAAGATCATTCATGAA----CTCACCAAACAAGGGTATCAGCTC 1347
BSNT_02054___ 1354 GTGACAGTTTCTCAG----CTTGAAGAGGTTAAAAAACAAAGAG------ 1393
||.|||| |||| |||||.|| .|||||| ||||||
BPUM_3090 1348 GTCACAG----TCAGCGAACTTGATGA-ATTAAAA---AAAGAGCGACAT 1389
BSNT_02054___ 1394 ----AAGC------GAAATAA 1404
|||| |.|||||
BPUM_3090 1390 GAACAAGCCCCTGTGCAATAA 1410
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