Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00986 and BPUM_3097
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:39
# Commandline: needle
# -asequence dna-align/BSNT_00986___ydhE.1.24716.seq
# -bsequence dna-align/BPUM_3097.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00986___ydhE-BPUM_3097.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00986___ydhE-BPUM_3097.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00986___ydhE
# 2: BPUM_3097
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1305
# Identity: 787/1305 (60.3%)
# Similarity: 787/1305 (60.3%)
# Gaps: 252/1305 (19.3%)
# Score: 2072.0
#
#
#=======================================
BSNT_00986___ 1 ATGAAGACAG----TATTGATTTTGAATTTTCCTGCGGAAGGCCATGTGA 46
.||..|| || |||||||| |..||||||||.|||||.|||||||
BPUM_3097 1 GTGGCGA-AGGTTTTATTGATT---ACATTTCCTGCTGAAGGGCATGTGA 46
BSNT_00986___ 47 ATCCTACCTTAGGCATTACAAAAGCGTTTTCCGATAAGGGATATGATGTC 96
||||||..|||||.||.|..|||||.|...|.|||...|||.||||.||.
BPUM_3097 47 ATCCTATGTTAGGAATCATCAAAGCATGGACAGATCGTGGAGATGAAGTG 96
BSNT_00986___ 97 CATTATATATCCACTGAAAAATATAAAAAACGATTAGAAGCAGC--GGGA 144
|||....|..|.||||.|.|.|||.||.|||||.| |||.| || .||.
BPUM_3097 97 CATGCGGTCACAACTGTACATTATGAAGAACGAAT-GAAAC-GCTTAGGC 144
BSNT_00986___ 145 GC-----------AACGGTCC-----ATCTTCACCGGG-------ATCTG 171
|| ||| .||| ||.||| || ||.||
BPUM_3097 145 GCTCACGTACATAAAC-ATCCAGACTATATTC----GGACATTACATGTG 189
BSNT_00986___ 172 CTG-CGAACGACACCT--ATT-CATGTCGGTTCGCCCAATGGCATTCTTG 217
| ||||.||.|.|| ||| |||| || |.|.|||
BPUM_3097 190 --GACGAAGGAAATCTCGATTCCATG----------CA--GCCGTTC--- 222
BSNT_00986___ 218 ATTTCGTGAAAATCCAT-ATCAAAACGTCATTGGACATTTTACAGATTGT 266
||||.|| |.|| .|..||||.|||||.||.||||||..|.|.||
BPUM_3097 223 -TTTCATG-----CGATGCTGCAAACATCATTTGATATTTTAGGGGTGGT 266
BSNT_00986___ 267 CAAAGACTTATCTAAG-AGCATTCAATTTGATTTTGTTTATTATGATAAA 315
..||..|.|||||.|| ||||||| ||||||||||||.||||.|||||..
BPUM_3097 267 GGAAACCCTATCTCAGCAGCATTC-ATTTGATTTTGTCTATTTTGATATG 315
BSNT_00986___ 316 TTCGGCGCGGGGGAATTGGTAAGGGATTACTTAGATATTCCAGGAGTCTC 365
||.||.||.|||||..|.||..|.|||||||||.|.||||||||..||..
BPUM_3097 316 TTTGGGGCTGGGGAGCTTGTTCGAGATTACTTACAAATTCCAGGGATCGG 365
BSNT_00986___ 366 TTCATCGGCGTCTTTCTTGTTTGGC--GAGGAGCA-CCTGAAAATCCTGC 412
||||....|.|||| ||||...|| ||||.||| ..|||.|..|||
BPUM_3097 366 TTCAAACCCATCTT--TTGTGCTGCAAGAGGCGCATTTTGATACACCT-- 411
BSNT_00986___ 413 CGCTGCATCCGGAGTCTGGAGCGCCGCTTGAATTGGATCA-AGAGTGCGA 461
|| ||.|.| ||| ||||.| |.|| .|||
BPUM_3097 412 --CT--ATACAG-----------------GAA--GGATGAGAAAG-CCGA 437
BSNT_00986___ 462 AGATCTTTTGGCAAAAATGAAAGAAACG-TACGGTGTT--GCCCCGAAAA 508
..||||.||.|.||..||..||| |.|| |..||.||| ||| |
BPUM_3097 438 TCATCTGTTAGAAAGCATACAAG-AGCGTTTTGGCGTTCAGCC------A 480
BSNT_00986___ 509 AC----CTGGTTCAATTCATGAACAATAAAGGGGAATTGAACGTAGTGTA 554
|| .||.|.|||||||||||.|||...||.||||||||..|.|||||
BPUM_3097 481 ACGCGTTTGATGCAATTCATGAAAAATCGCGGAGAATTGAATATCGTGTA 530
BSNT_00986___ 555 TACAAGCCGTTATTTTCAGCCAGAAAG--TGATCGTTTCGGGGATGAATG 602
||||||....||||||||||| | || |||.|.|.| ||||.|
BPUM_3097 531 TACAAGTGAATATTTTCAGCC-----GTCTG-TCGATGCTG---TGAACG 571
BSNT_00986___ 603 -----TCTGTTT--ATCGGGCCAAGCTTTCCAAAGAGAGCGGAAAAAACG 645
|.||||| ||.||.||.|||||||.|||.||.||.||..|....
BPUM_3097 572 ATTCATTTGTTTTCATTGGACCGAGCTTTCTAAAAAGGGCAGATCAGCAT 621
BSNT_00986___ 646 GATTTCCCGATTGAACAGCT-----------AAAAGATGAGAGTGTCATT 684
|||||||||.|.|| |||| |||||.|| |.
BPUM_3097 622 GATTTCCCGCTGGA--AGCTCTTGAGCGTGAAAAAGTTG---------TC 660
BSNT_00986___ 685 TATATTTCAATGGGGACTGTAC-TGGATCATACAGAGG-ATTTCTTCAAC 732
|.||||||.|||||||||||.| |||| .||||||||| |||| ||.||.
BPUM_3097 661 TTTATTTCGATGGGGACTGTTCTTGGA-AATACAGAGGCATTT-TTTAAT 708
BSNT_00986___ 733 CTTTGTATTGATGCATTTTCAGGCTTTAACGGAAAAGTCGTCATCGCTGC 782
.|.|||||||||||.|||.|.|..|||.|.||||||||.||..||||..|
BPUM_3097 709 ATGTGTATTGATGCCTTTGCCGATTTTGATGGAAAAGTGGTGCTCGCAAC 758
BSNT_00986___ 783 CGGAGAAAAAGCGGACCTGACCAAATTAAAGCAGGCGCCGGAAAACTTTA 832
.||.|||||||.|||.|.|.|....|||||..|.|| ||.||.
BPUM_3097 759 AGGTGAAAAAGTGGATCAGTCTCTCTTAAAAGAAGC--------ACCTTC 800
BSNT_00986___ 833 TCATT--------GCTCCGTATGTCCCTCAGCTGGAAGTGCTGGAGCAAT 874
||||| |..||.|||||.||.|||||.||||||||.||.|...
BPUM_3097 801 TCATTTTCTGATCGAGCCTTATGTGCCGCAGCTTGAAGTGCTTGAACTGA 850
BSNT_00986___ 875 CGGATGTTTTCATTACACACGGCGGAATGAACAGCGTAAACGAAGGCATT 924
|.||.||.||..|.|||||.||||||||||||||.||.||.|||||||||
BPUM_3097 851 CAGACGTGTTTGTGACACATGGCGGAATGAACAGTGTCAATGAAGGCATT 900
BSNT_00986___ 925 CATT-TCAGCGTGCCACTGGTTGTCATGCC--TCATGACAAGGATCAGCC 971
|||| ||| |||||||.||||||||||.|| || |||||.||||||||
BPUM_3097 901 CATTATCA-CGTGCCAATGGTTGTCATTCCGGTC--GACAAAGATCAGCC 947
BSNT_00986___ 972 GATGGTGGCGCAGCGTCTCTCTGAACTCCATGCAGGCTATGTC--ATCTC 1019
||||||.||.||..|.||..|.||.||...||| ||.| |.|.|
BPUM_3097 948 GATGGTCGCACAAAGACTGACCGAGCTATCTGC------TGCCCGAGCAC 991
BSNT_00986___ 1020 ----TAAAGATGAAGT-----CAATGC--CCAAATATTAAAACAGGCCGT 1058
|||||||.||.| |||.|| | |||.|.|..||||
BPUM_3097 992 TTGATAAAGATCAACTGACAGCAAAGCAGC-------TAAGAGAAACCGT 1034
BSNT_00986___ 1059 AGATGAGGTTTT-----GCGCAACGATCAGTATATGGCAGGCATTAAAAA 1103
.||....|||.| |||..|||..|.|| ||.||.|||.||||
BPUM_3097 1035 GGAATCTGTTCTAGGAAGCGACACGTACCGT-----GCTGGAATTGAAAA 1079
BSNT_00986___ 1104 AATCAATCAAAGCTTCAAAGAATGTATGGACA-----TGGAA--GAAGTG 1146
|||..|..||||||||.|| ||| ||||| || |.
BPUM_3097 1080 AATTGAAGAAAGCTTCCAA----------ACAGCAGGTGGAACCGA--TA 1117
BSNT_00986___ 1147 ATGGA--GCG---GATTGATGAGTTGATTCGCCAAAAAAACA-----AAT 1186
|.|.| ||| |||.|||.|.|.||| ||..|..||||| |||
BPUM_3097 1118 AAGCATTGCGGACGATCGATCAATGGAT--GCAGACGAAACAGACTCAAT 1165
BSNT_00986___ 1187 AA--- 1188
.|
BPUM_3097 1166 TATGA 1170
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