Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05259 and BPUM_3102

See Amino acid alignment / Visit BSNT_05259 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:52
# Commandline: needle
#    -asequence dna-align/BSNT_05259___clpP.1.24716.seq
#    -bsequence dna-align/BPUM_3102___clpP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05259___clpP-BPUM_3102___clpP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05259___clpP-BPUM_3102___clpP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05259___clpP
# 2: BPUM_3102___clpP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 600
# Identity:     506/600 (84.3%)
# Similarity:   506/600 (84.3%)
# Gaps:           9/600 ( 1.5%)
# Score: 2138.0
# 
#
#=======================================

BSNT_05259___      1 ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGC     50
                     ||||||||||||||||||||||||||||||||.||.||.|||||||||||
BPUM_3102___c      1 ATGAATTTAATACCTACAGTCATTGAACAAACAAATCGTGGGGAAAGAGC     50

BSNT_05259___     51 GTATGACATTTATTCTCGTCTATTAAAGGATCGTATCATCATGCTTGGAT    100
                     .||.|||||||||||||||||.|||||.||.|||||.|||||||||||.|
BPUM_3102___c     51 TTACGACATTTATTCTCGTCTTTTAAAAGACCGTATTATCATGCTTGGTT    100

BSNT_05259___    101 CTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTC    150
                     |||||||.||||||||.|||||.||||||||||||||||||||..|.|||
BPUM_3102___c    101 CTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTC    150

BSNT_05259___    151 TTAGCAGCAGAAGACCCTGAAAAAGAAATTTCTCTTTACATCAACAGCCC    200
                     ||||.|||.|||||.||.||||||||.||||||.|.|||||.||||||||
BPUM_3102___c    151 TTAGAAGCTGAAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCC    200

BSNT_05259___    201 GGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACCATGCAGTTTA    250
                     .|||||.||.||.|||||.||||||||.||.||.|||||.|||||.||||
BPUM_3102___c    201 TGGCGGTTCAATCACAGCTGGTATGGCCATTTACGATACGATGCAATTTA    250

BSNT_05259___    251 TTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCATCAATGGGC    300
                     ||||.||.||||||||.||.||||||||.||||||||||||||.|||||.
BPUM_3102___c    251 TTAAACCAAAGGTATCAACCATTTGTATTGGTATGGCTGCATCTATGGGT    300

BSNT_05259___    301 GCTTTCCTGCTTGCAGCCGGCGAAAAAGGCAAACGCTATGCGCTTCCAAA    350
                     ||.|||||||||||.||.||.||||||||.||.||.|||||.||||||||
BPUM_3102___c    301 GCGTTCCTGCTTGCTGCTGGTGAAAAAGGTAAGCGTTATGCCCTTCCAAA    350

BSNT_05259___    351 CAGTGAAGTCATGATTCACCAGCCACTTGGCGGTGCGCAAGGTCAGGCGA    400
                     |||||||||||||||||||||.|||||.||.|||||.||||||||.||.|
BPUM_3102___c    351 CAGTGAAGTCATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA    400

BSNT_05259___    401 CAGAAATTGAAATTGCCGCGAAACGCAT--TCTCTTGCTTCGCGACAAAC    448
                     ||||||||||||||||.||.|||||.||  |.||||  |.|||||.||||
BPUM_3102___c    401 CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTT--TACGCGATAAAC    448

BSNT_05259___    449 TAAACAAAGTCCTTGCTGAACGTACTGGCCAGCCGCTTGAAGTGATCGAA    498
                     |.|||.||||.|||||||||||||||||.|||||..|||||||.||.||.
BPUM_3102___c    449 TGAACCAAGTACTTGCTGAACGTACTGGTCAGCCAATTGAAGTCATTGAG    498

BSNT_05259___    499 CGCGACACAGACCGTGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATA    548
                     |||||.|||||.|||||.||||||||..|.||.||||||||.|||.||||
BPUM_3102___c    499 CGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATA    548

BSNT_05259___    549 CGGCCTGATTGACAAAATTTTGAC---TCACACAGAAG-ACAAAAAGTAA    594
                     |||.||.|||||||||.|.|||||   |.|.||||||| ||||||| |||
BPUM_3102___c    549 CGGACTCATTGACAAAGTCTTGACCCGTAATACAGAAGAACAAAAA-TAA    597


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