Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05276 and BPUM_3103

See Amino acid alignment / Visit BSNT_05276 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:52
# Commandline: needle
#    -asequence dna-align/BSNT_05276___yvdD.1.24716.seq
#    -bsequence dna-align/BPUM_3103.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05276___yvdD-BPUM_3103.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05276___yvdD-BPUM_3103.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05276___yvdD
# 2: BPUM_3103
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 620
# Identity:     419/620 (67.6%)
# Similarity:   419/620 (67.6%)
# Gaps:          70/620 (11.3%)
# Score: 1382.0
# 
#
#=======================================

BSNT_05276___      1 ---------------TTGAAAACCATTTGTGTATTTGCGGGATCAAACCC     35
                                    .|||||||.||||||||.|||||.||.||.||.||
BPUM_3103          1 ATGGAGCTGTTTTTGATGAAAACGATTTGTGTGTTTGCTGGTTCGAATCC     50

BSNT_05276___     36 TGGGGGAAATGAAG--CGTATA-AAAGAAAA-GCGGCAGAGCTTGGCGTG     81
                     .||.|    |||||  |||.|| |||||||| ||.|.||||||.||.|..
BPUM_3103         51 AGGCG----TGAAGGACGTCTACAAAGAAAAGGCTGTAGAGCTAGGGGCT     96

BSNT_05276___     82 TATATGGCTGAGCAGGGAATCGGCCTTGTCTATGGGGGCTCCCGCGTCGG    131
                     ||||||||.|||||.|..|||.|.|||||.||.||.||.||.||..|.||
BPUM_3103         97 TATATGGCAGAGCAAGACATCCGACTTGTATACGGCGGTTCACGAATTGG    146

BSNT_05276___    132 CTTGATGGGCACGATTGCCGACGCGA--TTATGGAAAACGGCGGAACTGC    179
                     .||.|||||..|.|||||.||.|.||  |||.|  |.|.|||||    ||
BPUM_3103        147 ATTAATGGGTGCCATTGCAGATGAGATCTTAAG--ACATGGCGG----GC    190

BSNT_05276___    180 A----ATCGGGGTCATGCCGAGCGGTTTGTTCAGCGGGGAGGTTGTCCAT    225
                     |    ||.|||||.|||||.|..||..|.||.||.||.||.||.||.|||
BPUM_3103        191 AAGTCATTGGGGTGATGCCTAAAGGGCTTTTTAGAGGAGAAGTGGTGCAT    240

BSNT_05276___    226 CAAAACCTGACTGAGCTGATTGAAGTAAACGGGATGCATGAACGAAAGGC    275
                     |||.|.|||||.||..|.||.|||||||..||.|||||.||||||||.||
BPUM_3103        241 CAAGAGCTGACAGAATTAATCGAAGTAACAGGAATGCACGAACGAAAAGC    290

BSNT_05276___    276 TAAAATGAGCGAGCTGGCGGACGGCTTTATCTCGATGCCGGGCGGCTTCG    325
                     .||||||||.||||||||.||.||.|||||..|.|||||.||||||||.|
BPUM_3103        291 GAAAATGAGTGAGCTGGCTGATGGATTTATTGCAATGCCAGGCGGCTTTG    340

BSNT_05276___    326 GTACATATGAAGAATTATTTGAAGTGCTGTGCTGGGCACAGATCGGCATC    375
                     ||||||||||||||||||||||.|||||.||||||||.||.||||||||.
BPUM_3103        341 GTACATATGAAGAATTATTTGAGGTGCTATGCTGGGCTCAAATCGGCATT    390

BSNT_05276___    376 CACCAAAAGCCAATCGGACTGTA-CAATGTAAACGGATATTTTGAACCAA    424
                     |||||||||||||||||..|||| ||| ||.||.|..|||||..|.||..
BPUM_3103        391 CACCAAAAGCCAATCGGCTTGTATCAA-GTGAATGACTATTTCAATCCGC    439

BSNT_05276___    425 TGATGAAAATGGTGAAATACAGCATTCAAGAAGGGTTTTCTAACGAATCG    474
                     |.||..|.||||||||.|..||..|.||.|||||.|||||.||.|||||.
BPUM_3103        440 TTATAGACATGGTGAAGTTTAGTGTACAGGAAGGTTTTTCGAATGAATCA    489

BSNT_05276___    475 CACCTAAAACTGATTCA------CAGCTCGTCACGG--CCGGATGAGTTA    516
                     ||.||..||.||.|.||      ||||        |  |||||.||.|||
BPUM_3103        490 CATCTTCAATTGTTACATGCTTCCAGC--------GAACCGGAGGAATTA    531

BSNT_05276___    517 ATTGAGCAAATGCAAAATTATTCTTAT------CCGATTTTAGAAAAAAA    560
                     |||...||.|||      |.|||||||      ||.|.|.|.||..|.||
BPUM_3103        532 ATTACACAGATG------TCTTCTTATCAAACACCAACTCTTGAGCAGAA    575

BSNT_05276___    561 GTGGACAGAAATT----TAA    576
                     .||||| |.|.||    |||
BPUM_3103        576 ATGGAC-GGAGTTGTCGTAA    594


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