Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05280 and BPUM_3105
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_05280___yvdB.1.24716.seq
# -bsequence dna-align/BPUM_3105.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05280___yvdB-BPUM_3105.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05280___yvdB-BPUM_3105.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05280___yvdB
# 2: BPUM_3105
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1702
# Identity: 1147/1702 (67.4%)
# Similarity: 1147/1702 (67.4%)
# Gaps: 188/1702 (11.0%)
# Score: 3681.5
#
#
#=======================================
BSNT_05280___ 1 ATGCGATTCTCAGGGAGA-TTCAAGG----GATAC----AATTTGCAGAA 41
|||||.||.|..||.||| ||.|||| ||||| ||.|||
BPUM_3105 1 ATGCGTTTTTATGGAAGATTTGAAGGATATGATACATCAAAGTTG----- 45
BSNT_05280___ 42 ATTTCAGAAAGACTTGATT-----GCAGGTATCGTAGTAGGTGTCGTGGC 86
||.|.||||| ||.||..|.||.||.||.||.|||||
BPUM_3105 46 ---------AGGCGTGATTTAATCGCTGGGCTTGTCGTGGGCGTTGTGGC 86
BSNT_05280___ 87 AATTCCTTTAGGAATGGCGTTTGCCATTGCCTCGGGAGTCGAGCCTGAAT 136
||||||||||||.|||||.|||||||||||.||.||.||||..||.||||
BPUM_3105 87 AATTCCTTTAGGCATGGCTTTTGCCATTGCATCTGGTGTCGGACCAGAAT 136
BSNT_05280___ 137 ATGGGCTGTACACTGTTGTTATAGCAGGGATTTGTATTTCTTTGTTTGGA 186
||||..|.||.||.||..|..|.||.||.||||..|||||.||||||||.
BPUM_3105 137 ATGGATTATATACAGTCATCGTTGCCGGCATTTTGATTTCATTGTTTGGT 186
BSNT_05280___ 187 GGATCAAAATATCAGATTGGCGGTCCGACGGGCGCCTTTGTCCCGATTTT 236
||.|||||.||||||||||||||.|||||.||.||.|||||.||||||||
BPUM_3105 187 GGTTCAAAGTATCAGATTGGCGGGCCGACTGGAGCGTTTGTTCCGATTTT 236
BSNT_05280___ 237 ATTCGGCATTGTCATGCAATACGGCTTGGAAAATCTGCTGATTGCGGGGT 286
|||.||.||.||||..|||||.||..|.|||||..|.||.|||||.||.|
BPUM_3105 237 ATTTGGTATCGTCAGCCAATATGGTATTGAAAACTTACTCATTGCCGGTT 286
BSNT_05280___ 287 TTATGGCAGGAGTG-ATGCTGGTGCTGTTTGGGCTGTTTAAGCTCGGAAA 335
|||||||||| ||| ||.||.||..|.||.||..|.||.||.||.|||||
BPUM_3105 287 TTATGGCAGG-GTGTATACTTGTCTTATTCGGAATATTCAAACTAGGAAA 335
BSNT_05280___ 336 AATAATGAAAT-------TCGTGCCCAAACCCGTTATCGTCGGTTTTACA 378
..|.||||||| |||| ||.||||||.||||.|||||.
BPUM_3105 336 GCTCATGAAATTTATTCCTCGT-------CCGGTTATCATCGGCTTTACT 378
BSNT_05280___ 379 GCCGGAATTGCCGTGCTGATCTTTACGGAACAAATCGCTAATTTTCTCGG 428
||.||.|||||.||..|.||.|||.|.|..||.||.||.||.||.|||||
BPUM_3105 379 GCTGGCATTGCTGTCATTATTTTTTCAGGGCAGATTGCCAACTTCCTCGG 428
BSNT_05280___ 429 ATTGAGAAA---TGTTGAAAAACATGAGAACTTTCATCACAACATGTTTG 475
||| ||| |||||||||.|||||.|.||||...|.|||.|||...|
BPUM_3105 429 ATT---AAAGGGTGTTGAAAAGCATGAAAGCTTTTTCCTCAATATGAGAG 475
BSNT_05280___ 476 AAATTGTGCAGCAGCTCGGCACCTTTAAC-GTATATGCCATTTTGACAGC 524
||||||||...||.|||||.|||.|.||| ||.| ||||||..|.|||||
BPUM_3105 476 AAATTGTGGTCCATCTCGGTACCGTAAACAGTCT-TGCCATCCTCACAGC 524
BSNT_05280___ 525 TGTGATCGGGCTC---GTCATTTTGCTTGTATCCGCC----AAGGTGATG 567
||||||.|||||| ||.|||||| .||.| ||....||.
BPUM_3105 525 TGTGATTGGGCTCATTGTGATTTTG-------GCGGCACAAAAATACATT 567
BSNT_05280___ 568 CCTAAAGTGCCGGGCGC---------TTTGTTGGCGCTTCTTATTTCCAC 608
||.|||.|.||.||.|| |||.||||| |||.||
BPUM_3105 568 CCAAAAATACCTGGTGCTCTATTAGGTTTATTGGC---------TTCAAC 608
BSNT_05280___ 609 AGTGGTCGCGGTTGTCTTTTTCCCTGACCGCATGGCAACGATCGGGTCAA 658
..|..|.||.|||.|||||||||..|..|...|.|.|||||||||.||..
BPUM_3105 609 GTTTCTAGCTGTTCTCTTTTTCCAAGGACAAGTTGAAACGATCGGCTCGG 658
BSNT_05280___ 659 CTTATGGAGAAATCCCCCGCCATTTGCCGGAA--TTTCAGTTTCCTGAGC 706
|.||.||.|||||.||.||.||..|||| || |||...||||||||..
BPUM_3105 659 CATACGGGGAAATTCCTCGTCAGCTGCC--AAGCTTTGCTTTTCCTGAAT 706
BSNT_05280___ 707 TTACTTTGGATAAAATGGT-TATGCTGTTTCCGGCTGCGCTTGTCATCGC 755
|.||..|.||.||||||.| ||| ||..|.||..|.|||.|||||||.||
BPUM_3105 707 TAACGATTGAAAAAATGATCTAT-CTCCTCCCTCCAGCGATTGTCATTGC 755
BSNT_05280___ 756 GCTTCTTGGAGGACTTGAGTCGATTTTGTCCGCAATGGTCGCTGATAACA 805
.|||.|.||.||..|.||.||.|||||.|||||||||||.||.||.||.|
BPUM_3105 756 ACTTTTAGGCGGCGTGGAATCAATTTTATCCGCAATGGTTGCAGACAATA 805
BSNT_05280___ 806 TGAAGGGCTCAAAGCATGACAGCAACAAGGAGCTTGTCGGCCAGGGGATT 855
||||.||.|||||||||||||||||.||.|||||||||||.||.||.|||
BPUM_3105 806 TGAAAGGTTCAAAGCATGACAGCAATAAAGAGCTTGTCGGGCAAGGAATT 855
BSNT_05280___ 856 GCGAATATGGCAGCGCCCCTGTTTGGCGGAATCCCGGCTACAGGAGCGAT 905
||.||||||||.||.||..|||||||.|||||.||.||.||.||.|||||
BPUM_3105 856 GCCAATATGGCGGCACCGTTGTTTGGAGGAATTCCAGCGACTGGGGCGAT 905
BSNT_05280___ 906 TGCGAGAACGGCGACCAATATAAAAAA---CGGAGC--GGTTTCCCCAGT 950
|||..|.|||||.||.||.||.||||| |||||| | |||..|
BPUM_3105 906 TGCCCGTACGGCAACAAACATCAAAAATGGCGGAGCAAG-----CCCGAT 950
BSNT_05280___ 951 TTCCGGCGTCGTTCACGGCGTAGTCGTTCTCCTTGTCCTGCTTGTATTTG 1000
|||.||.||.||.||.|||||.|||||..|.|||.||.|..|..||||||
BPUM_3105 951 TTCAGGTGTTGTGCATGGCGTCGTCGTCTTGCTTATCTTAATGCTATTTG 1000
BSNT_05280___ 1001 CGCCTTATGCGTCCCATG-TGCCGCTCGCCAGTATGGCACCGATTCTCAT 1049
|.||.||||||| |.||| |.||.||.||....||||||||||||.|.||
BPUM_3105 1001 CACCATATGCGT-CGATGATTCCACTTGCTGCGATGGCACCGATTTTAAT 1049
BSNT_05280___ 1050 GGTGGTCGCATGGAATATGAGTGAGCGCAAGGAAG------TCGCAAACA 1093
|.|.||.||.||||||||||||||| ||..||| || ||.|
BPUM_3105 1050 GTTTGTAGCTTGGAATATGAGTGAG---AAAAAAGAGTTTATC---AATA 1093
BSNT_05280___ 1094 TGCTGAGACTGAAAAATGCTGATTCCTTTAT-TTTGGCGGCGACCTTCGC 1142
|..|.|.|.||||||||||.||||||.||.| .|||.| |..||||||..
BPUM_3105 1094 TTGTAAAAGTGAAAAATGCGGATTCCCTTGTACTTGTC-GTTACCTTCTT 1142
BSNT_05280___ 1143 CCTTACGGT--TCTGTTTGACTTAATCATCGGTGTGGCAACCGGATTGCT 1190
.||.||||| ||.| |||.||.||.||.||.|| .||||.|..|||
BPUM_3105 1143 GCTGACGGTCATCGG--TGATTTGATAATTGGCGT---CACCGCAGGGCT 1187
BSNT_05280___ 1191 GCTTGCATT-----CGTGTTC---TTTATCAGAAGAATGAGCGAAGCGAC 1232
|||| |.|..|| |||||||.||.|||||||.|....||
BPUM_3105 1188 -----CATTTTAGCCTTTATCGCTTTTATCAAAAAAATGAGCCAGATAAC 1232
BSNT_05280___ 1233 CCGCA----TCCACAAT------------CA---GGAAAC-GCATCCTGT 1262
|.||| |||| ||| || |||||| ||| .|||.
BPUM_3105 1233 CAGCATTCGTCCA-AATGTTGTGGTTCCCCAAATGGAAACGGCA-GCTGC 1280
BSNT_05280___ 1263 TCTGGCGAAGAGAGA-AGATCCATC----TGTCAGCATGTATGCCATAGA 1307
|.|.| .||.|.||| ||| |||.| ..||||.|||||.|||||.||
BPUM_3105 1281 TTTAG-AAAAACAGACAGA-CCAGCAAGGCATCAGTATGTACGCCATTGA 1328
BSNT_05280___ 1308 AGGGCCGCTGTTTTTCGGATCAATTGATTCCCTTGAATCGTCATTGCTGG 1357
|||||||||||||||||||.|||..|||||.||.|||...|||.|..|||
BPUM_3105 1329 AGGGCCGCTGTTTTTCGGAACAACAGATTCACTCGAAAATTCAATTTTGG 1378
BSNT_05280___ 1358 AGCATGTACAGAAAAAACCGAAAACCCTTATTCTGCTCATGAATAAGGTG 1407
|.|||||.||||.|||.||||||||.||.|||||||||||||||||.||.
BPUM_3105 1379 ACCATGTTCAGACAAAGCCGAAAACGCTCATTCTGCTCATGAATAAAGTC 1428
BSNT_05280___ 1408 CACTATATGGATACGTCAGCTGAAGCGGTGCTTGGGAACATTATGAATCG 1457
.|.||||||||.||.|||||.|||||||||||...|||.||....|||||
BPUM_3105 1429 AATTATATGGACACATCAGCAGAAGCGGTGCTGATGAATATCTCCAATCG 1478
BSNT_05280___ 1458 AATTAAGCGCCACAATGGAAAGCTGATGATTGTAGGATTGCAATCGCAGC 1507
..|.||||..||.|||||.||||||||||||||.|||.|.|||||.||||
BPUM_3105 1479 GTTAAAGCATCATAATGGTAAGCTGATGATTGTCGGACTTCAATCACAGC 1528
BSNT_05280___ 1508 CAAAGGAGCTGCTGCATAAAACAGGCCTTTTTCACAAAATAGGAAAGCAG 1557
|.||.|||||..|||.|..||||||.|||||.||..|.||.|||||.|||
BPUM_3105 1529 CGAAAGAGCTTTTGCGTCGAACAGGTCTTTTCCATCATATTGGAAAACAG 1578
BSNT_05280___ 1558 CATTTCTTTGATCACCA--TGATGAAA--TCAC------------AGGTT 1591
.|||||||||| ||.| ||||||.| |||| ||
BPUM_3105 1579 TATTTCTTTGA--ACGAACTGATGATATTTCACCTCAGCATCTATAG--- 1623
BSNT_05280___ 1592 AA 1593
BPUM_3105 1623 -- 1623
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