Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05296 and BPUM_3117

See Amino acid alignment / Visit BSNT_05296 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:53
# Commandline: needle
#    -asequence dna-align/BSNT_05296___trxB.1.24716.seq
#    -bsequence dna-align/BPUM_3117___trxB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05296___trxB-BPUM_3117___trxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05296___trxB-BPUM_3117___trxB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05296___trxB
# 2: BPUM_3117___trxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 953
# Identity:     755/953 (79.2%)
# Similarity:   755/953 (79.2%)
# Gaps:          25/953 ( 2.6%)
# Score: 3023.0
# 
#
#=======================================

BSNT_05296___      1 GTGTCAGAAGAAAAAATTTATGACGTGATTATAATCGGCGCGGGCCCTGC     50
                     |||||||||||||||||.||.||...|||.||.||.||.|||||.|||||
BPUM_3117___t      1 GTGTCAGAAGAAAAAATCTACGATACGATCATCATTGGAGCGGGACCTGC     50

BSNT_05296___     51 TGGGATGACGGCCGCTGTATACACATCAAGAGCGAATTTATCGACATTAA    100
                     .||.|||||.||||||||.||.||||||.|.|..|||.|.||.|||||.|
BPUM_3117___t     51 CGGAATGACAGCCGCTGTTTATACATCACGTGGAAATCTTTCAACATTGA    100

BSNT_05296___    101 TGATTGAAAGAGGAATTCCTGGCGGACAAATGGCCAATACGGAAGATGTA    150
                     |||||||||||||.|||||.|||||.||||||||.||||||||||||||.
BPUM_3117___t    101 TGATTGAAAGAGGGATTCCAGGCGGTCAAATGGCTAATACGGAAGATGTC    150

BSNT_05296___    151 GAAAACTATCCTGGATTCGAAAGTATCCTTGGGCCTGAGCTTTCTAACAA    200
                     ||.|||||||||||.||.|||||.||..|.|||||.||.|||||.||.||
BPUM_3117___t    151 GAGAACTATCCTGGCTTTGAAAGCATTTTAGGGCCAGAACTTTCAAATAA    200

BSNT_05296___    201 AATGTTTGAACACGCGAAAAAATTCGGCGCTGAATACGCTTATGGCGATA    250
                     ||||||.||.||.|||||.||||||||.||||||||.||.||||||||||
BPUM_3117___t    201 AATGTTCGACCATGCGAAGAAATTCGGTGCTGAATATGCATATGGCGATA    250

BSNT_05296___    251 TTAAAGAGGTCATTGACGGCAAAGAGTACAAAGTAGTCAAAGCTGGTTCA    300
                     |.|||||..||.|||||||..|||||||||||.|.||||||||.||||||
BPUM_3117___t    251 TCAAAGAAATCGTTGACGGTGAAGAGTACAAAATCGTCAAAGCCGGTTCA    300

BSNT_05296___    301 AAGGAATATAAAGCCCGTGCTGTCATCATTGCTGCAGGTGCGGAATATAA    350
                     ||.|||||.||||..||..|||||||.|||.|.||||||||||||||.||
BPUM_3117___t    301 AAAGAATACAAAGGACGCTCTGTCATTATTTCAGCAGGTGCGGAATACAA    350

BSNT_05296___    351 AAAAATCGGCGTGCCTGGCGAAAAAGAATTGGGCGGACGCGGTGTATCTT    400
                     |||||||||.|..||.||.|||||||||.|.||||||||.||.||.||||
BPUM_3117___t    351 AAAAATCGGTGCACCAGGTGAAAAAGAACTTGGCGGACGAGGCGTCTCTT    400

BSNT_05296___    401 ATTGTGCAGTATGTGACGGCGCTTTCTTTAAAGGCAAAGAACTTGTCGTT    450
                     |.|||||||||||||||||.||||||||.|||...|||||.||.|||||.
BPUM_3117___t    401 ACTGTGCAGTATGTGACGGTGCTTTCTTCAAAAATAAAGAGCTCGTCGTC    450

BSNT_05296___    451 GTTGGCGGCGGAGATTCCGCGGTTGAAGAAGGCGTATATCTGACTCGTTT    500
                     .||||.||.|||||.||.|||||.|||||.||.||.||.||.||.||.||
BPUM_3117___t    451 ATTGGTGGAGGAGACTCTGCGGTAGAAGAGGGTGTGTACCTCACACGCTT    500

BSNT_05296___    501 CGCTTCAAAAGTAACGATTGTTCACAGACGTGATAAACTCCGTGCTCAAA    550
                     .||.|||||||||||.||.|||||.|||||.|||||.||.|||||.||||
BPUM_3117___t    501 TGCGTCAAAAGTAACAATCGTTCATAGACGCGATAAGCTTCGTGCCCAAA    550

BSNT_05296___    551 GTATTCTTCAAGCGAGAGCATTTGATAATGAAAAAGTTGACTTCCTATGG    600
                     |.|||.|.||||||.|.||.|||||||||||||||.|.||||||.|.|||
BPUM_3117___t    551 GCATTTTACAAGCGCGTGCTTTTGATAATGAAAAAATCGACTTCATGTGG    600

BSNT_05296___    601 AACAAAACCGTGAAGGAAATTCATGAGGAAAACGGCAAAGTCGGTAACGT    650
                     |||||||||||.||..|.|||.||||.||.|||||.||||||||.|..||
BPUM_3117___t    601 AACAAAACCGTTAAACAGATTAATGAAGAGAACGGTAAAGTCGGCAGTGT    650

BSNT_05296___    651 AACGCTTG-TCGATACGGTAACCGGTGAAGAAAG-TGAATTCAAAACAGA    698
                     ||| |||| |.||||||||.||.|||||| |||| .||.||.||||||||
BPUM_3117___t    651 AAC-CTTGATTGATACGGTGACTGGTGAA-AAAGAAGACTTTAAAACAGA    698

BSNT_05296___    699 CGGCGTATTCATTTACATCGGCATGCTTCCTCTGTCTAAACCGTTTGAAA    748
                     |||.||.||.||.||.||.||.||||||||..|.||||||||.|||||||
BPUM_3117___t    699 CGGGGTCTTTATCTATATTGGGATGCTTCCATTATCTAAACCATTTGAAA    748

BSNT_05296___    749 ATCTGGGCATTACGAATGAAGAAGGCTACATCGAAACAAACGAACGCATG    798
                     ||||.||||||||.|||||||||||.||.|||||.|||||||||.|.|||
BPUM_3117___t    749 ATCTCGGCATTACAAATGAAGAAGGATATATCGAGACAAACGAAAGAATG    798

BSNT_05296___    799 GAGACAAAGGTTGAAGGAATTTTCGCTGCCGGAGACATTCGCGAAAAATC    848
                     ||.||||..||.|||||.||||||||.||.||.||||||||.||||||.|
BPUM_3117___t    799 GAAACAAGAGTGGAAGGTATTTTCGCCGCTGGTGACATTCGTGAAAAAAC    848

BSNT_05296___    849 ACTGCGCCAAATCGTAACGGCTACAGGAGACGGAAGTATTGCGGCACAAA    898
                     |||.||.|||||.||.||.||.|||||.||||||||||||||.|||||||
BPUM_3117___t    849 ACTTCGTCAAATTGTGACAGCAACAGGTGACGGAAGTATTGCCGCACAAA    898

BSNT_05296___    899 GCGTACAGCATTATGTCGAAGAGCTT---------------------CAA    927
                     |||..|||||||||||.|||||||||                     .||
BPUM_3117___t    899 GCGCTCAGCATTATGTAGAAGAGCTTGCTGAAAAGCTGAAAGCAGCGAAA    948

BSNT_05296___    928 TAA    930
                     |||
BPUM_3117___t    949 TAA    951


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