Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05305 and BPUM_3121

See Amino acid alignment / Visit BSNT_05305 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:54
# Commandline: needle
#    -asequence dna-align/BSNT_05305___hisI.1.24716.seq
#    -bsequence dna-align/BPUM_3121___hisI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05305___hisI-BPUM_3121___hisI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05305___hisI-BPUM_3121___hisI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05305___hisI
# 2: BPUM_3121___hisI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 656
# Identity:     458/656 (69.8%)
# Similarity:   458/656 (69.8%)
# Gaps:          52/656 ( 7.9%)
# Score: 1537.5
# 
#
#=======================================

BSNT_05305___      1 ATGAAACAGGCAGATGAACTGCGTTTTAACGAGGACGGATTAATTCCTGC     50
                     ||||||||||||.|.|||.|....|||||.||||..||.||.||.|||||
BPUM_3121___h      1 ATGAAACAGGCAAACGAATTATCCTTTAATGAGGCAGGCTTGATACCTGC     50

BSNT_05305___     51 CATCGTGCAGGATGCGGCAAGCAAAGAAGTGCTGACACTTGCCTATATGA    100
                     .||.||.||||||||...|||.||.|||||..|||||.|.||.|||||||
BPUM_3121___h     51 GATTGTACAGGATGCTCAAAGTAAGGAAGTCTTGACATTGGCGTATATGA    100

BSNT_05305___    101 A-CAAGGAATCATACGAAAAAACGCTGGAAACGAAGGAAACATGGTTTTA    149
                     | ||| |||||.||.||||||||..|.||.||...|||||||||||||||
BPUM_3121___h    101 ATCAA-GAATCCTATGAAAAAACAATAGAGACAGGGGAAACATGGTTTTA    149

BSNT_05305___    150 CAGCCGCTCACGCCAAGCGTTATGGCATAAAGGAGAAACCTCAGGGAACA    199
                     ||||||.|||.|..|.|.|.|.|||||.|||||.|..||.||.||..|.|
BPUM_3121___h    150 CAGCCGGTCAAGAAACGAGCTTTGGCACAAAGGCGCCACATCTGGACATA    199

BSNT_05305___    200 CGCAAGCG-GTCAAAGGTATCCGGTATGACTGCGACGAGGACGCGTTGCT    248
                     |.| |||| ||||.|...||.||.||||||||.|||.||||.|||.||||
BPUM_3121___h    200 CTC-AGCGCGTCACATCCATTCGATATGACTGTGACAAGGATGCGCTGCT    248

BSNT_05305___    249 CGTACTCGTAGAACC--GTCAGGCCCGGCATGCCACACTGGCAGCTACAG    296
                     .||.||.||...|||  ||  ||.||.||.|||||||||||.||.||.||
BPUM_3121___h    249 TGTTCTTGTCACACCAAGT--GGACCAGCGTGCCACACTGGTAGTTATAG    296

BSNT_05305___    297 CTGTTTTACGAAGGAA------------CAAACAGAAGAACAGGCCGCGG    334
                     |||.|||.||.|.|||            |||||.|||||.|||       
BPUM_3121___h    297 CTGCTTTTCGGAAGAAGGCGAGAAACGTCAAACGGAAGAGCAG-------    339

BSNT_05305___    335 GCCGA------TTCGGCATCATGAACGAACTGGAGCGCGTAATCGCGGAA    378
                        ||      ||||  ||..|.||.|||||.||.|..||.||.|||.||
BPUM_3121___h    340 ---GATCGTTTTTCG--ATTTTAAATGAACTTGAACAGGTGATTGCGAAA    384

BSNT_05305___    379 CGCCAAGCGGAGATGCCTGAAGGAGCTTACACCACTTACCTTTTCCGTG-    427
                     ||.||.||.||.|||||.|||||.|||||.||.||.||.||.||   || 
BPUM_3121___h    385 CGTCAGGCTGAAATGCCAGAAGGCGCTTATACAACCTATCTATT---TGA    431

BSNT_05305___    428 --AAGGCGTCGATAAGATTTTGAAAAAAGTCGGTGAAGAAGCATCCGAAG    475
                       ||||.||||||||.||..|||||||.||.||.||||||||.||.||.|
BPUM_3121___h    432 AAAAGGGGTCGATAAAATCCTGAAAAAGGTAGGGGAAGAAGCGTCAGAGG    481

BSNT_05305___    476 TCATCATCGCCGCGAAAAACCGGGACCACGAGGAACTCAAATGGGAAGCG    525
                     |||||||.||.||||||||||||||.||.||.|||.|.|||||||||.|.
BPUM_3121___h    482 TCATCATTGCTGCGAAAAACCGGGATCAAGAAGAATTGAAATGGGAAACA    531

BSNT_05305___    526 GCAGACCTGCTGTATCACCTGCTTGTCCTGCTCAGAGAACAAGC-CTTGC    574
                     ||.||.||.|||||||||||||||||..|..|..|.|||| ||| .||||
BPUM_3121___h    532 GCCGATCTTCTGTATCACCTGCTTGTGTTATTGCGTGAAC-AGCAATTGC    580

BSNT_05305___    575 CGCTGGATGATGTGCTTGACGTATTGAAAAAACGCCATTCTGAGAAAGAA    624
                     |.||.||||||||..|..|.|||||.||||||||.|||      .|||..
BPUM_3121___h    581 CTCTTGATGATGTTTTAAAAGTATTAAAAAAACGTCAT------CAAGGT    624

BSNT_05305___    625 GAGTAA    630
                     ||||.|
BPUM_3121___h    625 GAGTGA    630


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